On Apr 11, 2014, at 12:54 AM, Jeroen Ooms <[email protected]> wrote:
> Running update.packages on R 3.1 for Mavericks complains that some > CRAN packages do not have binary builds available. For example lme4 is > missing from http://cran.r-project.org/bin/macosx/mavericks/contrib/3.1/. > > Is there any reason for this, Yes, only packages that pass make check are present. > or do I just need some patience? I installed lme4 from source and it seems to > build without problems. > It fails make check with * checking for unstated dependencies in tests ... OK * checking tests ... ERROR Running the tests in ‘tests/priorWeights.R’ failed. Last 13 lines of output: > sleepLmer <- lmer(Reaction ~ Days + (Days|Subject), + sleepstudy, weights = w, + REML = FALSE) > sleepComp <- compFunc(sleepLme, sleepLmer) > stopifnot(do.call(all.equal, sleepComp)) > ## look at relative differences: > sleepComp$tolerance <- 0 > do.call(all.equal, sleepComp) [1] "Mean relative difference: 0.000818191" > > library(mlmRev) Error in library(mlmRev) : there is no package called 'mlmRev' Execution halted * elapsed time (check, wall clock): 7:57 However, mlmRev itself depends on lme4, so it's not available. It seems like a bug in the tests which should not fail if mlmRev is not available since it's only suggested, not required. Cheers, Simon > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
