James - that worked perfectly. Many thanks. Dr David Iles Visiting Research Fellow School of Biology University of Leeds Leeds LS2 9JT
From: James Eales <[email protected]<mailto:[email protected]>> Date: Wednesday, 16 April 2014 11:08 To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>>, Dave Iles <[email protected]<mailto:[email protected]>> Subject: Re: [R-SIG-Mac] OS X R console Package Manager error Hello, I had exactly the same trouble Try pasting this into the console then click "Package Manager" again package.manager <- function () { if (.Platform$GUI != "AQUA") stop("this function is intended to work with the Aqua GUI") loaded.pkgs <- .packages() x <- library() x <- x$results[x$results[, 1] != "base", ] pkgs <- x[, 1] pkgs.desc <- x[, 3] is.loaded <- !is.na<http://is.na/>(match(pkgs, loaded.pkgs)) pkgs.status <- character(length(is.loaded)) pkgs.status[which(is.loaded)] <- "loaded" pkgs.status[which(!is.loaded)] <- " " pkgs.url <- file.path(find.package(pkgs), "html", "00Index.html") load.idx <- .Call("pkgmanager", is.loaded, pkgs, pkgs.desc, pkgs.url) toload <- which(load.idx & !is.loaded) tounload <- which(is.loaded & !load.idx) for (i in tounload) { cat("unloading package:", pkgs[i], "\n") do.call("detach", list(paste("package", pkgs[i], sep = ":"))) } for (i in toload) { cat("loading package:", pkgs[i], "\n") library(pkgs[i], character.only = TRUE) } } On Wednesday, 16 April 2014 10:20:49 UTC+1, David Iles wrote: Hi Folks, I updated my version of R yesterday using the R-3.1.0-snowleopard.pkg downloaded from CRAN. I tried to open Package Manager, but it failed to open, with the following message.... Error: '.find.package' is defunct. Use 'find.package' instead. See help("Defunct") I deleted R.app and the R frameworks folder, and re-installed R from scratch, but the error persists. Clearly I have missed something from previous installations that is still lurking somewhere on my computer. Can anyone point me to what I need to delete/edit/update to correct this issue? Many thanks, Dr David Iles Visiting Research Fellow School of Biology University of Leeds Leeds LS2 9JT > sessionInfo() R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected]<javascript:> https://stat.ethz.ch/mailman/listinfo/r-sig-mac [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
