Try adding the other two configure.args "--with-mysql-inc" and
"--with-mysql-lib":
$ R CMD INSTALL
--configure-args='--with-mysql-dir=/usr/local/mysql-5.6.17-osx10.7-x86_64
--with-mysql-inc=/usr/local/mysql-5.6.17-osx10.7-x86_64/include
--with-mysql-lib=/usr/local/mysql-5.6.17-osx10.7-x86_64/lib'
RMySQL_0.9-3.tar.gz.tar.gz
or
install.packages("RMySQL",
configure.args="--with-mysql-dir=/usr/local//mysql-5.6.17-osx10.7x86_64
--with-mysql-inc=/usr/local/mysql-5.6.17-osx10.7-x86_64/include
--with-mysql-lib=/usr/local/mysql-5.6.17-osx10.7-x86_64/lib")
Cheers,
Scott
On May 28, 2014, at 8:11 AM, Adrian Dușa <[email protected]> wrote:
> Hello everyone,
>
> I am having some difficulties installing the RMySQL package from sources
> (not available via the R Package Installer GUI, probably for the same
> reasons). Just installed a fresh instance of MySQL, which I could find in:
> /usr/local/mysql-5.6.17-osx10.7-x86_64
>
>
> This is what I get:
>
> $ R CMD INSTALL RMySQL_0.9-3.tar.gz.tar.gz
> ...
> Configuration error:
> could not find the MySQL installation include and/or library
> directories. Manually specify the location of the MySQL
> libraries and the header files and re-run R CMD INSTALL.
>
>
> I tried:
>
> $ export PKG_CPPFLAGS="/usr/local/mysql-5.6.17-osx10.7-x86_64/include/"
> $ export PKG_LIBS="/usr/local/mysql-5.6.17-osx10.7-x86_64/lib/"
> $ R CMD INSTALL RMySQL_0.9-3.tar.gz.tar.gz
> ...
> In file included from RS-MySQL.c:22:
> ./RS-MySQL.h:32:10: fatal error: 'mysql.h' file not found
> #include <mysql.h>
> ^
> 1 error generated.
>
>
> Also tried:
>
> $ R CMD INSTALL
> --configure-args='--with-mysql-dir=/usr/local/mysql-5.6.17-osx10.7-x86_64'
> RMySQL_0.9-3.tar.gz.tar.gz
>
> (with the same result)
>
> I'd be grateful for any hint, thanks in advance,
> Adrian
>
>
> --
> Adrian Dusa
> University of Bucharest
> Romanian Social Data Archive
> 1, Schitu Magureanu Bd.
> 050025 Bucharest sector 5
> Romania
> Tel.:+40 21 3126618 \
> +40 21 3120210 / int.101
> Fax: +40 21 3158391
>
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>
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