On 23/09/2014 00:03, Joanna Burgar wrote:
Good day,
I am trying to run R2jags on R version 3.0.2 (2013-09-25) -- "Frisbee
Sailing". I have downloaded jags (JAGS-Mavericks-3.4.0) and successfully installed
both rjags and R2jags yet for some reason when I try and load the library(rjags) I
receive the following error message:
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so,
10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ‘rjags’
Does anyone have any idea why this might be? I have also tried other versions
of R and it doesn't seem to be working for them either.
First, as the R posting guide says, we only support current versions of
R on the mailing lists It asked you to update *before posting*.
Second, you did not tell us your exact OS. <= 10.8 and >= 10.9 default
to different and incompatible C++ compilers: R and JAGS have to be built
with the same one. Now, binary distributions of R 3.0.2 were built with
g++ 4.2.x:
http://sourceforge.net/projects/mcmc-jags/files/JAGS/3.x/Mac%20OS%20X/
shows builds for Mavericks and SnowLeopard, and it is the latter which
is compatible with the binary R 3.0.2.
Thanks!
Joanna
_______________________________________________________
install.packages("rjags", dependencies=TRUE)
also installing the dependency ‘coda’
trying URL
'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/coda_0.16-1.tgz'
Content type 'application/x-gzip' length 195822 bytes (191 Kb)
opened URL
==================================================
downloaded 191 Kb
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/rjags_3-13.tgz'
Content type 'application/x-gzip' length 155926 bytes (152 Kb)
opened URL
==================================================
downloaded 152 Kb
The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages
install.packages("R2jags", dependencies=TRUE)
also installing the dependencies ‘abind’, ‘R2WinBUGS’
trying URL
'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/abind_1.4-0.tgz'
Content type 'application/x-gzip' length 32962 bytes (32 Kb)
opened URL
==================================================
downloaded 32 Kb
trying URL
'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2WinBUGS_2.1-19.tgz'
Content type 'application/x-gzip' length 777630 bytes (759 Kb)
opened URL
==================================================
downloaded 759 Kb
trying URL
'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2jags_0.04-03.tgz'
Content type 'application/x-gzip' length 55203 bytes (53 Kb)
opened URL
==================================================
downloaded 53 Kb
The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages
library(rjags)
Loading required package: coda
Loading required package: lattice
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so,
10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ‘rjags’
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--
Brian D. Ripley, [email protected]
Emeritus Professor of Applied Statistics, University of Oxford
1 South Parks Road, Oxford OX1 3TG, UK
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