I just did a workshop for new R users. the only serious installation problem I saw was Macintosh users and tctlk. From this discussion, I knew to tell both people they needed to download quartz.macosforge.org and indeed that solved it.
Is there a place on the package DESCRIPTION file to state that dependency, thus triggering the download and installation of quartz? That would take the responsibility for discovering this need away from the end user? Rich On Thu, Oct 23, 2014 at 2:15 PM, John Fox <[email protected]> wrote: > Dear Simon, > > I installed Yosemite a couple of days ago and everything seems to work fine > so far, including the tcltk demo that caused problems for Peter, and the > Rcmdr package, which gives Tcl/Tk a pretty good workout. I first reinstalled > XQuartz, as suggested, and I also reinstalled R and updated all packages, > though the latter two steps probably weren't necessary. I figured that it > would help to hear positive experiences as well as problems. > > The only issue that I've encountered so far is specific to checking packages > under RStudio, which doesn't appear to find pdflatex; OTOH, R CMD check runs > fine in a terminal window. I haven't yet tried to resolve this problem. > > Best, > John > >> -----Original Message----- >> From: Simon Urbanek [mailto:[email protected]] >> Sent: Tuesday, October 21, 2014 4:38 PM >> To: John Fox >> Cc: Amos B. Elberg; r-sig-mac; Spencer Mass; Ben Clark; peter dalgaard; >> Marc Schwartz; David Winsemius; Hadley Wickham >> Subject: Re: [R-SIG-Mac] Yosemite and R >> >> I wasn't able to reproduce but I suspect those are all red herrings - >> there are really no subprocesses involved at all in either case. >> >> On Oct 21, 2014, at 4:19 PM, John Fox <[email protected]> wrote: >> > >> > Dear all, >> > >> > I wonder whether this issue also accounts for the tcltk problems that >> have been reported. (I haven't yet upgraded to Yosemite myself, hoping >> to wait for the wrinkles to be ironed out, though I'll likely do so >> shortly if only to see what happens.) >> > >> > Best, >> > John >> > >> >> -----Original Message----- >> >> From: [email protected] [mailto:r-sig-mac-bounces@r- >> >> project.org] On Behalf Of Amos B. Elberg >> >> Sent: Tuesday, October 21, 2014 12:40 PM >> >> To: David Winsemius; Hadley Wickham >> >> Cc: r-sig-mac; Spencer Mass >> >> Subject: Re: [R-SIG-Mac] Yosemite and R >> >> >> >> If the full environment isn’t getting passed to R-spawned sub- >> >> processes, that might explain an error I’ve been having since the >> >> update: when R is launched from the command line, calls that should >> >> create an X11 window in the background fail unless an X11 window has >> >> already been created with the width and height specified: >> >> >> >>> plot(rnorm(100)) >> >> Error in .External2(C_X11, d$display, d$width, d$height, >> >> d$pointsize, : >> >> invalid 'width' or 'height' >> >>> X11() >> >> Error in .External2(C_X11, d$display, d$width, d$height, >> >> d$pointsize, : >> >> invalid 'width' or 'height' >> >>> X11(width = 5, height = 5) >> >>> plot(rnorm(100)) >> >> [now it works - and any number of additional windows can be spawned >> >> without repeating the error] >> >> [quitting R and reopening, without quitting XQuartz, and I get the >> same >> >> error calling plot() before X11(width = , height = ) >> >> >> >> This does not happen in RStudio. I don’t use the R.app gui; I >> opened >> >> it just now to test and I got a slew of path-related errors, but >> >> they’re as likely to have to do with my not-maintained R.app as with >> >> anything else. >> >> >> >> I had not reported this already because I wasn’t confident whether >> its >> >> a yosemite issue, an R-patched issue, or just something odd in the >> way >> >> I built R. >> >> >> >> If incomplete-environment-passing is the new normal, is this not >> going >> >> to be a common issue for packages that spawn sub-processes? >> >> >> >> >> >> From: Hadley Wickham <[email protected]> >> >> Reply: Hadley Wickham <[email protected]>> >> >> Date: October 21, 2014 at 10:12:13 AM >> >> To: David Winsemius <[email protected]>> >> >> Cc: r-sig-mac <[email protected]>>, Spencer Mass >> >> <[email protected]>> >> >> Subject: Re: [R-SIG-Mac] Yosemite and R >> >> >> >>> No, it is not. It is expected that the path in the terminal be >> >>> different to the path in R, it is _not_ expected that the path in R >> >> be >> >>> different to the path in a subprocess started by R. >> >>> >> >>> (Well it is now expected, because this appears to be a new security >> >>> feature in Yosemite) >> >> >> >> The best thread I could find on the problem is here: >> >> https://code.google.com/p/mactlmgr/issues/detail?id=102 >> >> >> >> -- >> >> http://had.co.nz/ >> >> >> >> _______________________________________________ >> >> R-SIG-Mac mailing list >> >> [email protected] >> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> >> >> [[alternative HTML version deleted]] >> >> >> >> _______________________________________________ >> >> R-SIG-Mac mailing list >> >> [email protected] >> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
