Inspite of succeeding with the compilation of R-3.1.2 using the intel suite of
compilers ver.2015.0.077 including MKL on my late 2014 MacBook Pro running
Yosemite (outlined here <http://feng.li/r-with-icc-mkl/>), I am unable to
install the excellent Rcpp package that I have been thoroughly enjoying thus
far via the prepackaged binary R for Mavericks. Now, I would like to speed
things up a bit, in particular use OpenMP that is seemingly incompatible with
the default clang. I am aware of the OpenMP/clang project but it seems that
installation on Yosemite is still dodgy.
Apart from several mentions of Warning in strptime during make -j8, make
installcompletes successfully and I am able to install most packages on the
freshly compiled R. The Rcpp package nevertheless fails with:
> install.packages("Rcpp")
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'Asia/Kolkata'
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'GMT'
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'America/New_York'
* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
Warning in as.POSIXlt.POSIXct(x, tz) :
unknown timezone 'America/New_York'
** libs
icpc -I/Users/username/R-3.1.2/include -DNDEBUG -I../inst/include/
-I/sw/include -I/usr/local/include -fPIC -g -O3 -c Date.cpp -o Date.o
In file included from ../inst/include/Rcpp/Vector.h(69),
from ../inst/include/Rcpp.h(38),
from Date.cpp(31):
../inst/include/Rcpp/vector/swap.h(35): error: "swap" is not a class or
function template name in the current scope
RCPP_GENERATE_SWAP(generic_proxy,VECSXP)
^
In file included from ../inst/include/Rcpp/Vector.h(69),
from ../inst/include/Rcpp.h(38),
from Date.cpp(31):
../inst/include/Rcpp/vector/swap.h(36): error: "swap" is not a class or
function template name in the current scope
RCPP_GENERATE_SWAP(generic_proxy,EXPRSXP)
^
In file included from ../inst/include/Rcpp/Vector.h(69),
from ../inst/include/Rcpp.h(38),
from Date.cpp(31):
../inst/include/Rcpp/vector/swap.h(37): error: "swap" is not a class or
function template name in the current scope
RCPP_GENERATE_SWAP(string_proxy,STRSXP)
^
Date.cpp(562): warning #437: reference to local variable of enclosing function
is not allowed
2 * sizeof *sp + 4 * TZ_MAX_TIMES];
^
compilation aborted for Date.cpp (code 2)
make: *** [Date.o] Error 2
ERROR: compilation failed for package ‘Rcpp’
Is there a way to fix this? Alternatively, how can I switch compilers to be
able to invoke 'OpenMP' via Rcpp on my MacBook?
PS: crossposted from
http://stackoverflow.com/questions/28633979/installing-rcpp-on-r-compiled-with-intel-composer-on-osx-yosemite?noredirect=1#comment45570611_28633979
<http://stackoverflow.com/questions/28633979/installing-rcpp-on-r-compiled-with-intel-composer-on-osx-yosemite?noredirect=1#comment45570611_28633979>
at Dirk’s suggestion.
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