On Mar 31, 2015, at 7:15 PM, Peter Langfelder <[email protected]>
wrote:
> Hi all,
>
> I hope the maintainer (Simon Urbanek?) of the CRAN Mac OS build system
> reads this
I happen to read this list, but we do ask developers to contact CRAN
maintainers directly.
> - the GO.db package used by the CRAN Mac OS X build machine
> seems to be out of date (or perhaps the bioconductor installation is
> broken). The check log of WGCNA (which depends on GO.db) says:
>
> Error : .onLoad failed in loadNamespace() for 'GO.db', details:
> call: match.arg(synchronous, c("off", "normal", "full"))
> error: 'arg' must be NULL or a character vector
> ERROR: lazy loading failed for package ‘WGCNA’
>
> Apparently this issue arises from an incompatibility of older GO.db
> with new RSQLite 1.0.0, see this thread
> https://support.bioconductor.org/p/63555/
>
> Can you please check that the bioconductor installation is up to date?
>
BioC dependencies are not typically updated automatically so I take this as a
request to update them.
Cheers,
Simon
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