Jose, I suspect you're using a rather old Mac that is no longer supported by our tools.
The only other alternative I can think of is that you may have better luck trying to use the older Fortran compiler from CRAN at https://cran.r-project.org/bin/macosx/tools/gfortran-4.2.3.pkg In order to avoid clashes with the newer compiler, you may need to run (on the command line) something like sudo ln -sfn gfortran /usr/local/bin/gfortran-4.8 I'm not sure if it will work, but that's the best guess short of installing the Homebrew toolchain and re-compiling R which is a bit of an overkill. Cheers, Simon > On Jul 28, 2015, at 3:13 PM, José Carlos Guerrero Antúnez > <[email protected]> wrote: > > Hi, > > First, thank you for your answers, and I have to admit that don't prepare > to do a bit more work, because I'm a user that I have no programming > skills, and therefore, I depend on people like you, to use these programs. > > According to the easier instruction, and I downloaded > gfortran-4.8.2-darwin13.tar.bz2 > > You'll want to unpack it in the root folder at `/` (or move it there after > unpacking); the directory structure is such that the necessary > pieces are dumped into `/usr/local/` and R will by default be able to discover > everything needed. > > It will not let me move the item "usr" to the root folder "/" > > Now I have this error message, > >> install.packages("~/Desktop/RMacoqui_1.0.tar.gz", repos = NULL, type = > "source", > lib="/Library/Frameworks/R.framework/Versions/3.2/Resources/library") > * installing *source* package ‘RMacoqui’ ... > ** libs > gfortran-4.8 -fPIC -g -O2 -c RMacoqui.f -o RMacoqui.o > gfortran-4.8: warning: couldn’t understand kern.osversion ‘14.4.0 > f951: internal compiler error: Illegal instruction: 4 > > f951: internal compiler error: Abort trap: 6 > gfortran-4.8: internal compiler error: Abort trap: 6 (program f951) > make: *** [RMacoqui.o] Abort trap: 6 > ERROR: compilation failed for package ‘RMacoqui’ > * removing > ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RMacoqui’ > Warning in install.packages : > installation of package ‘/Users/joseca_IMac/Desktop/RMacoqui_1.0.tar.gz’ > had non-zero exit status > > Many thanks again, > > > Best regards, > > > > > 2015-07-27 23:49 GMT-03:00 Kevin Ushey <[email protected]>: > >> There error here is, as it says: >> >>> make: gfortran-4.8: No such file or directory >> >> In other words, `make` is attempting to call `gfortran-4.8` to compile >> FORTRAN code in your package, but is unable to find it -- likely >> because it's not installed. >> >> Since 'gfortran' is no longer distributed as part of Apple's command >> line tools, you'll need to install it from another source -- Simon >> Urbanek hosts a version of 'gfortran' at http://r.research.att.com/ >> (more specifically, in the `libs` directory at >> http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2). >> You'll want to unpack it in the root folder at `/` (or move it there >> after unpacking); the directory structure is such that the necessary >> pieces are dumped into `/usr/local/` and R will by default be able to >> discover everything needed. >> >> Alternatively (if you're prepared to do a bit more work), you can use >> the OS X package manager homebrew to install 'gcc' and hence >> 'gfortran'. Install homebrew following the instructions here: >> >> http://brew.sh/ >> >> and then, from the command line, call >> >> brew install gcc >> >> This will install an up-to-date version of both 'gcc' and 'gfortran'. >> Since it won't be installed into a directory that's 'visible' to R by >> default, you'll need to tell R how to find it -- you can check the >> StackOverflow questions + responses here for ideas on how to >> accomplish that. >> >> >> http://stackoverflow.com/questions/29992066/rcpp-warning-directory-not-found-for-option-l-usr-local-cellar-gfortran-4-8 >> >> http://stackoverflow.com/questions/19920281/rcpparmadillo-compile-errors-on-os-x-mavericks/19920761#19920761 >> >> As an aside -- I am not sure why make is attempting to call >> `gfortran-4.8` rather than `gfortran`. You might have to check >> `~/.R/Makevars` or other package configuration variables. (Do you >> _really_ need to be compiling with `gfortran-4.8` specifically?) >> >> Hope this helps, >> Kevin >> >> >> On Mon, Jul 27, 2015 at 7:19 PM, David Winsemius <[email protected]> >> wrote: >>> >>> On Jul 27, 2015, at 6:49 PM, José Carlos Guerrero Antúnez wrote: >>> >>>> Hi, >>>> >>>> I have this problem when I try to install a package, I'm working with >> OSX >>>> Yosemite 10.10.4. >>>> >>>> Best regards, >>>> >>>>> install.packages("~/Downloads/RMacoqui_1.0.tar.gz", repos = NULL, type >> = >>>> "source", >>>> lib="/Library/Frameworks/R.framework/Versions/3.2/Resources/library") >>>> * installing *source* package ‘RMacoqui’ ... >>>> ** libs >>>> gfortran-4.8 -fPIC -g -O2 -c RMacoqui.f -o RMacoqui.o >>>> make: gfortran-4.8: No such file or directory >>> >>> I suspect that you have not obtained Xcode and installed Command line >> tools and perhaps not installed XQuartz (although that is not the cause of >> any error that I see here.) >>> >>> Apple has pretty much always made XCode available for free. You need to >> register with Apple as a developer and then get the XCode version that is >> mated to your version of OSX. >>> >>> >>> >>> -- >>> David >>> >>>> make: *** [RMacoqui.o] Error 1 >>>> ERROR: compilation failed for package ‘RMacoqui’ >>>> * removing >>>> >> ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RMacoqui’ >>>> Warning in install.packages : >>>> installation of package ‘/Users/joseca/Downloads/RMacoqui_1.0.tar.gz’ >> had >>>> non-zero exit status >>>> >>>> >>>> >>>> >>>> -- >>>> ################################################################ >>>> Dr. José Carlos Guerrero >>>> Laboratorio de Desarrollo Sustentable y Gestión Ambiental del Territorio >>>> (LDSGAT) >>>> Instituto de Ecología y Ciencias Ambientales (IECA) >>>> Facultad de Ciencias >>>> Universidad de la República >>>> Montevideo-URUGUAY >>>> ################################################################ >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> [email protected] >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >>> David Winsemius >>> Alameda, CA, USA >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> [email protected] >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > > > -- > ################################################################ > Dr. José Carlos Guerrero > Laboratorio de Desarrollo Sustentable y Gestión Ambiental del Territorio > (LDSGAT) > Instituto de Ecología y Ciencias Ambientales (IECA) > Facultad de Ciencias > Universidad de la República > Montevideo-URUGUAY > ################################################################ > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
