yes, its installed now. And now R CMD CHECK gives me the following warnings.
* installing *source* package ‘pkgname’ ... ** libs gfortran-4.8 -fPIC -Wall -g -O2 -c epidata.f95 -o epidata.o gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 gfortran-4.8 -fPIC -Wall -g -O2 -c epilike.f95 -o epilike.o gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 gfortran-4.8 -fPIC -Wall -g -O2 -c epimc.f95 -o epimc.o gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pkgname.so epidata.o epilike.o epimc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 ld: warning: object file (epidata.o) was built for newer OSX version (10.12) than being linked (10.4) ld: warning: object file (epilike.o) was built for newer OSX version (10.12) than being linked (10.4) ld: warning: object file (epimc.o) was built for newer OSX version (10.12) than being linked (10.4) installing to /Users/Vineetha/Desktop/pkgname.Rcheck/pkgname/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (pkgname) -Vineetha On Wed, Oct 26, 2016 at 3:38 PM, Keith O'Hara <[email protected]> wrote: > Can you check if the command line tools are installed by running: > > xcode-select --install > > in terminal. > > Keith > > > > On Oct 26, 2016, at 5:28 PM, Kodalore Vijayan, Vineetha W <[email protected]> > wrote: > > > > Hello, > > > > I removed gfortran 6.1 and installed gfortran v4.8.2. > > > > Now i have another error: > > > > gfortran-4.8 -fPIC -Wall -g -O2 -c test.f95 -o test.o > > > > gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 > > > > gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined > > dynamic_lookup -single_module -multiply_defined suppress > > -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o > test.so > > test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework > > -Wl,CoreFoundation > > > > gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0 > > > > ld: library not found for -ldylib1.o > > > > collect2: error: ld returned 1 exit status > > > > make: *** [test.so] Error 1 > > > > > > Any idea what this means or how I can solve? I have limited knowledge on > > these installations. > > > > > > Thanks, > > > > Vineetha > > > > On Tue, Oct 25, 2016 at 7:37 AM, Kodalore Vijayan, Vineetha W < > [email protected] > >> wrote: > > > >> Hi Ken, > >> > >> Its not working with Makevar anymore. I guess I have to degrade to > >> gfortran4.8.2. Will try that. > >> > >> Thank you, > >> Vineetha > >> > >> On Mon, Oct 24, 2016 at 5:32 PM, Ken Beath <[email protected]> wrote: > >> > >>> See full instructions at https://stat.ethz.ch/pipermail > >>> /r-sig-mac/2016-September/012056.html thanks to Bob Rudis. > >>> > >>> Ken > >>> > >>>> On 25 Oct. 2016, at 9:25 am, Kodalore Vijayan, Vineetha W < > >>> [email protected]> wrote: > >>>> > >>>> Hello, > >>>> > >>>> I have an issue on Mac OS ElCapitan ( just now upgraded to sierra) > with > >>>> Xcode 7 and gfortran 6.1 ( downloaded from > >>>> https://gcc.gnu.org/wiki/GFortranBinaries. ). I'm developing an R > >>> package > >>>> and wants to make it portable. > >>>> > >>>> The package was working fine until October 18th along with a Makevar > >>> file > >>>> created under ~/.R. The Makevar file contains : > >>>> F77 = gfortran > >>>> FC = gfortran > >>>> FLIBS = -L/usr/local/gfortran/lib > >>>> > >>>> (Please refer: > >>>> http://stackoverflow.com/questions/40092423/r-package-with- > >>> fortran-source-code-how-to-make-makevars-file-under-pkgna > >>> me-s/40127535#40127535 > >>>> ). > >>>> > >>>> But now when I run R CMD CHECK on my system, its throws the > >>>> following error: > >>>> > >>>> * installing *source* package ‘EpiILM’ ... > >>>> ** libs > >>>> gfortran-4.8 -fPIC -Wall -g -O2 -c Edata.f95 -o Edata.o > >>>> make: gfortran-4.8: No such file or directory > >>>> make: *** [Edata.o] Error 1 > >>>> ERROR: compilation failed for package ‘EpiILM’ > >>>> * removing ‘/Users/Vineetha/Desktop/EpiILM.Rcheck/EpiILM’ > >>>> > >>>> Basically, my Makevar file is not resolving the issue now. Any help > >>> would > >>>> be appreciated. > >>>> > >>>> Thanks, > >>>> Vineetha > >>>> > >>>> [[alternative HTML version deleted]] > >>>> > >>>> _______________________________________________ > >>>> R-SIG-Mac mailing list > >>>> [email protected] > >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>> > >>> > >> > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-SIG-Mac mailing list > > [email protected] > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
