> On Feb 16, 2018, at 11:15 AM, Ossenbruggen, Paul <paul.ossenbrug...@unh.edu> > wrote: > > First of all, I want to thank David Wensemius and Brandon Hurr. > > Next, I want to say that my problem was more complicated than removing the > invisible file, .RData. After removal and startup of RStudio, I received: > > Error: object 'CF.mb' not found. > > I removed the following files: .Rhistory .Rprfile .Rprofile .Rdata. After > removing them, my error message went away.
That makes sense. The history files can get corrupted as well. You can also get a clean load of R by running from the command line with the --vanilla flag. For those using the R.app GUI, the history file in use is .Rapp.history rather than .Rhistory. See the R-MAC-FAQ. David. > > Paul > > > > On Feb 16, 2018, at 6:00 AM, > r-sig-mac-requ...@r-project.org<mailto:r-sig-mac-requ...@r-project.org> wrote: > > > > ******************************************************************************************************************************************** > Send R-SIG-Mac mailing list submissions to > r-sig-mac@r-project.org<mailto:r-sig-mac@r-project.org> > > To subscribe or unsubscribe via the World Wide Web, visit > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=S86paWuTkKAFxU7d9pmaDrGf5fQvUDN4lTfSAFihUSI&s=5USUZGu_N566kZFSUUNPm__bJ6mBMkTahr2mCeIwDXw&e= > or, via email, send a message with subject or body 'help' to > r-sig-mac-requ...@r-project.org > > You can reach the person managing the list at > r-sig-mac-ow...@r-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of R-SIG-Mac digest..." > > > Today's Topics: > > 1. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (Ossenbruggen, Paul) > 2. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (David Winsemius) > 3. Re: R-SIG-Mac Digest, Vol 180, Issue 5 (Brandon Hurr) > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 15 Feb 2018 14:18:45 +0000 > From: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> > To: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> > Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 > Message-ID: <e70bf2ce-f724-4d3b-aaa4-276387e68...@unh.edu> > Content-Type: text/plain; charset="utf-8" > > Given David Winsemius’ reply, I obtained the following information: > > > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".*" -ls > > 52645352 24 -rw-r--r-- 1 PJO staff 8196 > Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//.DS_Store > > 52645353 16 -rw-r--r-- 1 PJO staff 6148 > Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//extdata/.DS_Store > > The following > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname > "CF.Rdata" -ls > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.mb" > -ls > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".mb" > -ls > return nothing or > PJO:SDE PJO$ > > I hope this information is of some use. > > Thanks, > Paul > > On Feb 15, 2018, at 6:00 AM, r-sig-mac-requ...@r-project.org wrote: > > Caution - External Email; > > ******************************************************************************************************************************************** > Send R-SIG-Mac mailing list submissions to > r-sig-mac@r-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= > or, via email, send a message with subject or body 'help' to > r-sig-mac-requ...@r-project.org > > You can reach the person managing the list at > r-sig-mac-ow...@r-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of R-SIG-Mac digest..." > > > Today's Topics: > > 1. R installation error caused by a bogus file. (Ossenbruggen, Paul) > 2. Re: Update of RcppParallel failed (Marc Girondot) > 3. Re: R installation error caused by a bogus file. > (David Winsemius) > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 14 Feb 2018 15:01:46 +0000 > From: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> > To: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> > Subject: [R-SIG-Mac] R installation error caused by a bogus file. > Message-ID: <0b742675-f1eb-4f2b-9f5d-f8587d399...@unh.edu> > Content-Type: text/plain; charset="utf-8" > > I receive the following error whenever I restart R and reload R onto my > computer: > > Error: object 'CF.mb' not found > [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0] > > The object 'CF.mb’ file is a bogus file. In actually, it does not and should > not exist and R should not attempting to load it. > > I suspect that I created it by mistake when I worked with RStudio in creating > a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The > extension “.md” makes sense. It is extension for a Markdown file. “.mb” > stands for some animation program extension, which I am not using. > > QUESTION: How do I stop R from looking for this object? > > Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. > My guess if I erase this call, I will be running R the way it is designed. > > Thanks, > > Paul > > > > > > > > > ------------------------------ > > Message: 2 > Date: Wed, 14 Feb 2018 16:11:11 +0100 > From: Marc Girondot <marc_...@yahoo.fr> > To: Keith O'Hara <keith.oh...@nyu.edu>, r-sig-mac R > <r-sig-mac@r-project.org> > Subject: Re: [R-SIG-Mac] Update of RcppParallel failed > Message-ID: <14a19e19-d1aa-d189-961d-dc0f988dc...@yahoo.fr> > Content-Type: text/plain; charset="utf-8"; Format="flowed" > > Hi Keith, > > When I try just now, a new version of RcppParallel was available > (4.3.20.2; previous one was 4.3.20.1): > > essai de l'URL > 'https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_src_contrib_RcppParallel-5F4.3.20.2.tar.gz&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=tR-Ab93uBbFJM8JTcIhOKJjwcpsCBojt9HslLckRpD0&e=' > > And it compiles without problem ! > > So the problem is solved ! > > Thanks > > Marc > > > > > Le 14/02/2018 à 14:58, Keith O'Hara a écrit : > This looks like an issue to bring up with the Rcpp guys, not R… but can you > provide a full printout of the error? I’m guessing this failed when compiling > a C file, not C++. > > > On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac > <r-sig-mac@r-project.org> wrote: > > This morning I had an update to apply for RcppParallel but it failed > > Here are some information: > > update.packages() > RcppParallel : > Version 4.3.20 installed in > /Library/Frameworks/R.framework/Versions/3.5/Resources/library > Version 4.3.20.1 available at > https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=Q1PNswfQSKGd9Ow-GalzQ1NXiyozpmVIw8u15cvI6vo&e= > .... > During instal, I had this error > > error: invalid argument '-std=gnu++11' not allowed with 'C' > > It failed with the two versions of clang that I have installed: > > clang++ --version > clang version 5.0.1 (tags/RELEASE_501/final) > Target: x86_64-apple-darwin17.4.0 > Thread model: posix > InstalledDir: /usr/local/opt/llvm/bin > > or > > clang++ --version > Apple LLVM version 9.0.0 (clang-900.0.39.2) > Target: x86_64-apple-darwin17.4.0 > Thread model: posix > InstalledDir: > /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin > > Do you have some idea about what's happened and how to solve this problem ? > > Thanks > > Marc > > _________________ > > Information on my R version: > > R.Version() > $platform > [1] "x86_64-apple-darwin15.6.0" > > $arch > [1] "x86_64" > > $os > [1] "darwin15.6.0" > > $system > [1] "x86_64, darwin15.6.0" > > $status > [1] "Under development (unstable)" > > $major > [1] "3" > > $minor > [1] "5.0" > > $year > [1] "2018" > > $month > [1] "02" > > $day > [1] "13" > > $`svn rev` > [1] "74247" > > $language > [1] "R" > > $version.string > [1] "R Under development (unstable) (2018-02-13 r74247)" > > $nickname > [1] "Unsuffered Consequences" > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= > > > > > ------------------------------ > > Message: 3 > Date: Wed, 14 Feb 2018 08:26:38 -0800 > From: David Winsemius <dwinsem...@comcast.net> > To: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> > Cc: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> > Subject: Re: [R-SIG-Mac] R installation error caused by a bogus file. > Message-ID: <f149708c-6939-4cc1-ace0-d042e0ffb...@comcast.net> > Content-Type: text/plain; charset="utf-8" > > > On Feb 14, 2018, at 7:01 AM, Ossenbruggen, Paul <paul.ossenbrug...@unh.edu> > wrote: > > I receive the following error whenever I restart R and reload R onto my > computer: > > Error: object 'CF.mb' not found > [R.app GUI 1.70 (7463) x86_64-apple-darwin15.6.0] > > The object 'CF.mb’ file is a bogus file. In actually, it does not and should > not exist and R should not attempting to load it. > > I suspect that I created it by mistake when I worked with RStudio in creating > a R package called “CF”. Most likely I typed “CF.mb" instead of “CF.md.” The > extension “.md” makes sense. It is extension for a Markdown file. “.mb” > stands for some animation program extension, which I am not using. > > QUESTION: How do I stop R from looking for this object? > > Apparently, R has saved a call to the 'CF.mb’ file somewhere in its memory. > My guess if I erase this call, I will be running R the way it is designed. > > > Have you deleted your `.Rdata` file? It's an invisible file and you may need > to use Terminal.app to remove it from you startup directory. Where exactly > that might be depends on how Rstudio is configured. > > -- > David Winsemius > Alameda, CA, USA > > 'Any technology distinguishable from magic is insufficiently advanced.' > -Gehm's Corollary to Clarke's Third Law > > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=cb_FXbPhkXtSllNWIRAvnjDKHGCFqirdYqn2-fCXn3E&s=lWzj9K1TzXbvPZJx5dD70IvjNFcxTS-iuZY36R4qlDo&e= > > > ------------------------------ > > End of R-SIG-Mac Digest, Vol 180, Issue 5 > ***************************************** > > > > ------------------------------ > > Message: 2 > Date: Thu, 15 Feb 2018 08:42:47 -0800 > From: David Winsemius <dwinsem...@comcast.net> > To: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu> > Cc: "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> > Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 > Message-ID: <71215ac9-0af2-444e-9b3f-96d6b5672...@comcast.net> > Content-Type: text/plain; charset="utf-8" > > > On Feb 15, 2018, at 6:18 AM, Ossenbruggen, Paul <paul.ossenbrug...@unh.edu> > wrote: > > Given David Winsemius’ reply, I obtained the following information: > > > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".*" -ls > > 52645352 24 -rw-r--r-- 1 PJO staff 8196 > Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//.DS_Store > > 52645353 16 -rw-r--r-- 1 PJO staff 6148 > Feb 9 13:20 /Users/PJO/Library/R/3.4/library/CF//extdata/.DS_Store > > The following > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname > "CF.Rdata" -ls > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname "CF.mb" > -ls > PJO:SDE PJO$ find /Users/PJO/Library/R/3.4/library/CF/ -type f -iname ".mb" > -ls > return nothing or > PJO:SDE PJO$ > > I hope this information is of some use. > > 1) When you reply to a posting you get from mailing list you should > aggressively trim the stuff that is not needed to understand you query. > > 2) My approach to managing my invisible files in the MacOS is to make thm > visible with this at a Terminal session: > > defaults write com.apple.finder AppleShowAllFiles YES > > Then you can find .Rdata files in whatever directory they might reside. I say > "they" becaus you might have one in any directory that was your working > directory at the time of a shutdown where you accept the R.app's offer to > save work. > > So, don't just look at your Library sub directory, which is not a typical > place to house a working directory. Instead look everywhere: > > find /Users/username/ -iname ".R*" > > > > > > Thanks, > Paul > > > > David Winsemius > Alameda, CA, USA > > 'Any technology distinguishable from magic is insufficiently advanced.' > -Gehm's Corollary to Clarke's Third Law > > > > > ------------------------------ > > Message: 3 > Date: Thu, 15 Feb 2018 15:13:52 -0800 > From: Brandon Hurr <brandon.h...@gmail.com> > To: David Winsemius <dwinsem...@comcast.net> > Cc: "Ossenbruggen, Paul" <paul.ossenbrug...@unh.edu>, > "r-sig-mac@r-project.org" <r-sig-mac@r-project.org> > Subject: Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5 > Message-ID: > <cag2omvujvxfvpg3e9n1ifscn1gh1q3xipq5qwhw_yz3p0ex...@mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > A newish shortcut also makes this easier. > > CMD + Shift + . > > This toggles hidden files without using terminal. > > 2) My approach to managing my invisible files in the MacOS is to make thm > visible with this at a Terminal session: > > defaults write com.apple.finder AppleShowAllFiles YES > > > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIGaQ&c=c6MrceVCY5m5A_KAUkrdoA&r=vXaWf90_eNvgohBfU4b0GVo02vigVp6lPSTKMqr0RwQ&m=S86paWuTkKAFxU7d9pmaDrGf5fQvUDN4lTfSAFihUSI&s=5USUZGu_N566kZFSUUNPm__bJ6mBMkTahr2mCeIwDXw&e= > > > ------------------------------ > > End of R-SIG-Mac Digest, Vol 180, Issue 6 > ***************************************** > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac