Was there a reason to refuse the system's offer to override?
--
David.
On 9/4/19 4:30 PM, Manuel Spínola wrote:
Dear list members,
I am having troubles running rJava.
MacOS 10.14.6
R 3.6.1
rJava 0.9-11
jdk 11.0.4
library(rJava)
Error: package or namespace load failed for ‘rJava’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so,
6): Library not loaded:
/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so
Reason: image not found
I run in terminal
(base) Manuels-MacBook-Pro:~ manuelspinola$ R CMD javareconf
Java interpreter : /usr/bin/java
Java version : 11.0.4
Java home path :
/Library/Java/JavaVirtualMachines/jdk-11.0.4.jdk/Contents/Home
Java compiler : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
trying to compile and link a JNI program
detected JNI cpp flags : -I$(JAVA_HOME)/include
-I$(JAVA_HOME)/include/darwin
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I/Library/Java/JavaVirtualMachines/jdk-11.0.4.jdk/Contents/Home/include
-I/Library/Java/JavaVirtualMachines/jdk-11.0.4.jdk/Contents/Home/include/darwin
-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
-I/usr/local/include -fPIC -Wall -g -O2 -c conftest.c -o conftest.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
conftest.so conftest.o
-L/Library/Java/JavaVirtualMachines/jdk-11.0.4.jdk/Contents/Home/lib/server
-ljvm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
JAVA_HOME :
/Library/Java/JavaVirtualMachines/jdk-11.0.4.jdk/Contents/Home
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /Library/Frameworks/R.framework/Resources
override rw-r--r-- root/admin for
/Library/Frameworks/R.framework/Resources/etc/Makeconf? (y/n [n])
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