Hervé,
> On 1/04/2020, at 6:19 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > > Thanks Simon. A couple of days ago we've started to use the R 4.0.0 alpha > build from https://mac.r-project.org/ for the Bioconductor build system. > Bioconductor packages depend on thousands of CRAN packages and one thing that > makes it hard for us and for our users to build/check Bioconductor packages > at the moment is the absence of Mac binary packages for R 4.0.0 on CRAN. Do > you have an estimate of when they will become available? > Both the packages and R are now available. I always recommend using the Mac-master https://mac.R-project.org as "mirror" since that one is most up-to-date. > Another question is where they are going to be hosted on CRAN. We need to > follow CRAN's layout for Bioconductor package repositories. > We have removed the extra layer, the package type is back to "mac.binary", so bin/macosx/contrib is the location. Cheers, Simon > Thanks! > H. > > > On 3/31/20 21:27, Simon Urbanek wrote: >> Dear Mac users, >> R 4.0.0 will be using an entirely new toolchain, entirely new build system >> on entirely new macOS version and hardware. Therefore I would like to ask >> you kindly to test the binaries from >> https://urldefense.proofpoint.com/v2/url?u=https-3A__mac.R-2Dproject.org&d=DwIFAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI&s=FJYxweW9WiMXbNMPpMM0bHXy020Gx9P-dHMrWmt7YzE&e= >> before the release as much as you can. Raising any issues after the release >> is too late! So please, please, test the pre-releases. Report any issues >> either directly to me or this mailing list. >> The nightly builds are signed, but not necessarily notarized. However, the >> build fulfils Apple's conditions and is known to pass notarization (in fact >> the the package available for download today is actually notarized) so it >> should be a good test for the release which will be notarized and should >> work on Catalina. >> For those that want to replicate our setup - technical details: we are now >> building with macOS 10.13 (High Sierra) as target (i.e. the oldest supported >> system), regular Apple Xcode/command line tools and GNU Fortran 8.2. R >> builds are running on macOS 10.15 (Catalina) with Xcode 11.4 using macOS >> 10.13 target. Packages are built on macOS 10.13 VMs with just Apple command >> line tools (this should make it easy to replicate the setup using Travis, >> for example). All 3rd party libraries that CRAN uses are available in >> https://urldefense.proofpoint.com/v2/url?u=http-3A__mac.r-2Dproject.org_libs-2D4_&d=DwIFAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI&s=3ZbcXBticg_8MfXltGKdQ9SFNqqeLqqwK_pUhEet7QY&e= >> The new R build system is in >> https://urldefense.proofpoint.com/v2/url?u=https-3A__svn.r-2Dproject.org_R-2Ddev-2Dweb_trunk_QA_Simon_R4&d=DwIFAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI&s=Mmt7_pVM5aUDR3hz93-e-PtadG7wSYpaZe8Ayi5Pv4I&e= >> Packages build system has not changed and is in >> https://urldefense.proofpoint.com/v2/url?u=https-3A__svn.r-2Dproject.org_R-2Ddev-2Dweb_trunk_QA_Simon_packages&d=DwIFAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI&s=eId6n08LVeIAMhMXe3jvLFKn9QGi4_by8owFreDDc84&e= >> We also plan to have a mac-builder available with similar function as the >> win-builder where pre-submission tests can be performed and potentially a >> Travis template. >> Please test R pre-releases and provide feedback! >> Thanks, >> Simon >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dsig-2Dmac&d=DwIFAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-PNBcsZhHb1MLy6fZakmLP6WDLMwL-VigJVzeFtPxOI&s=ubqivtpb1OZ2I0MEbVvGlGDK-tfti3DPtIv4LQ-Ks6A&e= > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
