Gilberto, can you provide details, please? (code, file to test etc.) The claim was that this is specific to BigSur which I doubt from your description. Please start a new thread about that at it seem entirely unrelated to the discussion at hand. There was an incompatibility with BigSur, but that was addressed.
Thanks, Simon > On 3/12/2020, at 11:11 AM, GilbertoCamara <gilberto.camara.i...@gmail.com> > wrote: > > Dear Simon > > Unfortunately, the problems reported are real. The rgdal version from CRAN > fails to recognise images in JPEG2000 format used by Copernicus Sentinel-2 > satellite. I have investigated the matter carefully with Roger Bivand. > > I tried many combinations on Mac OS Big Sur: > (a) rgdal from CRAN (binary) + GDAL from homebrew. > (b) rgdal from CRAN (source) + GDAL from homebrew. > (c) rgdal from CRAN (binary) + GDAL Mac OS Frameworks from > https://www.kyngchaos.com/software/frameworks/ > (d) rgdal from CRAN (source) + GDAL from kyngchaos. > (e) rgdal from CRAN (source) + GDAL/GEOS/etc (source) with Apple clang 11.0 > (f) rgdal from CRAN (source) + GDAL/GEOS/etc (source) with Apple clang 12.0 > > Only option (f) works correctly. > > Best regards > Gilberto > >> On 2 Dec 2020, at 22:44, Simon Urbanek <simon.urba...@r-project.org> wrote: >> >> Are you chasing a red herring here? Switching tools won help you - in fact >> they cause more issues since you'd need R-devel version of R to avoid >> breakage with the most recent tools or extra flags. I'm not sure which issue >> you are trying to solve. For gdal et al - make sure you install the latest >> version for CRAN - it is compatible with BigSur, older versions (before >> BigSur) were not. >> >> Please start a new thread about questions unrelated to the original post as >> it's unclear if there are any open questions in the thread. Also please only >> answer if your have anything useful to say - if someone asks a question >> about the GUI it's rather pointless to post when you say you don't use it >> ... And if you ask a question, please be specific so we can help. >> >> There is a lot of misinformation around, so be careful with random >> suggestions, they are very often plain wrong. >> >> Cheers, >> Simon >> >> >> >> >>> On 3/12/2020, at 6:52 AM, Spencer Graves <spencer.gra...@prodsyse.com> >>> wrote: >>> >>> Sorry: Typo: I tried "sudo xcode-select --install" and got the same >>> error. This was in Terminal where "The default interactive shell is now >>> zsh." It's not critical, because "I was able to update Xcode from App >>> Store." >>> >>> >>> Thanks for the reply. sg >>> >>> >>> On 2020-12-02 11:48, Dr Eberhard W Lisse wrote: >>>> sudo xcode-select --install >>>> el >>>> On 2020-12-02 18:52 , Spencer Graves wrote: >>>>> $ clang --version >>>>> Apple clang version 11.0.3 (clang-1103.0.32.59) >>>>> Target: x86_64-apple-darwin20.1.0 >>>>> Thread model: posix >>>>> InstalledDir: >>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin >>>>> >>>>> >>>>> >>>>> ** "sudo rm -rf /Library/Developer/CommandLineTools" deleted >>>>> "CommandLineTools". Then "sudo xcode-select —install" gave me "invalid >>>>> argument '—install'". "sudo xcode-select —install" gave me the same. >>>>> >>>>> >>>>> ** Fortunately, I was able to update Xcode from App Store. Now I >>>>> get: >>>>> >>>>> >>>>> $ clang --version >>>>> Apple clang version 12.0.0 (clang-1200.0.32.27) >>>>> Target: x86_64-apple-darwin20.1.0 >>>>> Thread model: posix >>>>> InstalledDir: >>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin >>>>> >>>>> >>>>> >>>>> If you also have a problem with "sudo xcode-select —install", you >>>>> might try the App Store. >>>>> >>>>> >>>>> Thanks, Spencer >>>>> >>>>> >>>>> On 2020-12-02 08:18, Gilberto Camara wrote: >>>>>> For me, it worked as follows >>>>>> >>>>>> sudo rm -rf /Library/Developer/CommandLineTools >>>>>> sudo xcode-select —install >>>>>> >>>>>> Best >>>>>> Gilberto >>>>>> >>>>>> >>>>>>> On 2 Dec 2020, at 15:15, Spencer Graves <spencer.gra...@prodsyse.com> >>>>>>> wrote: >>>>>>> >>>>>>> What should I do to "make sure to have installed the latest >>>>>>> version of Apple's development environment, including version 12.0 of >>>>>>> the compiler"? >>>>>>> >>>>>>> >>>>>>> Thanks, >>>>>>> Spencer Graves >>>>>>> >>>>>>> >>>>>>> On 2020-12-02 07:36, GilbertoCamara wrote: >>>>>>>> Dear all, >>>>>>>> I am running R 4.0.3 on BigSur without major performance issues. I >>>>>>>> am using RStudio instead of the R GUI. >>>>>>>> I had to build all spatial packages (rgdal, sf, terra and raster) >>>>>>>> from source using the Apple clang version 12.0.0 compiler. I also >>>>>>>> had to build GDAL from scratch, since neither the “homebrew” version >>>>>>>> nor the “kyngchaos” version work well with BigSur. >>>>>>>> If anyone is building packages from source, please make sure to have >>>>>>>> installed the latest version of Apple’s development environment, >>>>>>>> including version 12.0 of the compiler as earlier versions do not >>>>>>>> work well in BigSur. >>>>>>>> Best >>>>>>>> Gilberto >>>>>>>> =========================== >>>>>>>> Prof Dr Gilberto Camara >>>>>>>> Secretariat Director >>>>>>>> GEO - Group on Earth Observations >>>>>>>>> On 2 Dec 2020, at 14:15, Bob Rudis <b...@rud.is> wrote: >>>>>>>>> >>>>>>>>> After a bit of git and google poking it seems this is happening to >>>>>>>>> users >>>>>>>>> of MacVim (https://github.com/macvim-dev/macvim/issues/1114) and a few >>>>>>>>> other FOSS projects. >>>>>>>>> >>>>>>>>> In various GH issues (like that one) the issue claims to be >>>>>>>>> resolved by >>>>>>>>> using the latest Xcode & SDK but that’s not likely to be a solution >>>>>>>>> for R >>>>>>>>> GUI (which I’m assuming you're using and where this error is coming >>>>>>>>> up). >>>>>>>>> >>>>>>>>> Some of the threads I saw made it seem like it was happening >>>>>>>>> especially on >>>>>>>>> Touch Bar-equipped MacBook Pros (but that’s not confirmed). >>>>>>>>> >>>>>>>>> When I try R GUI on Big Sur (on the new M1 Mini) — either just plain R >>>>>>>>> scripts or plotting — I do not see this, nor do I see this on my Intel >>>>>>>>> MacBook Pro (both are on the latest Big Sur beta and R 4.0.3). >>>>>>>>> >>>>>>>>> On Dec 2, 2020 at 7:53:26 AM, Spencer Graves >>>>>>>>> <spencer.gra...@prodsyse.com> >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> I didn't get this with R 4.0.3 under macOS Big Sur 11.0.1 with "time >>>>>>>>>> R CMD build" / check. I have not tried it under RStudio. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> sg >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On 2020-12-02 05:01, Dr Eberhard W Lisse wrote: >>>>>>>>>> >>>>>>>>>> I don't get this in 4.0.3 (using the command line version of R) and I >>>>>>>>>> >>>>>>>>>> don't get this in RStudio 1.3.1093 either. I use the homebrew >>>>>>>>>> versions >>>>>>>>>> >>>>>>>>>> without the R GUI even installed. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> I am sure more detail will be helpful to the developers. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> el >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On 02/12/2020 11:09, Maria-Angeles Casares-de-Cal via R-SIG-Mac >>>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>>> To those in charge of R for Mac OS X: >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> I have installed the new Big Sur operating system and now I >>>>>>>>>>> always get >>>>>>>>>> >>>>>>>>>>> a warning similar to: >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> 2020-12-02 09:52:00.647 R[703:11786] Warning: Expected min height of >>>>>>>>>> >>>>>>>>>>> view: (<NSPopoverTouchBarItemButton: 0x7f9c6bb3df50>) to be less >>>>>>>>>>> than >>>>>>>>>> >>>>>>>>>>> or equal to 30 but got a height of 32.000000. This error will be >>>>>>>>>> >>>>>>>>>>> logged once per view in violation. >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> and the computer becomes very slow. >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Can I do something to fix it, or will we have to wait for an R >>>>>>>>>>> update? >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Thank you very much for your attention. >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> Sincerely, >>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> María-Ángeles Casares-de-Cal >>>>>>>>>> >>>>>>>>>> [...] >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> R-SIG-Mac mailing list >>>>>>>>>> R-SIG-Mac@r-project.org >>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>>>>>>> >>>>>>>>> >>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> R-SIG-Mac mailing list >>>>>>>>> R-SIG-Mac@r-project.org >>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> R-SIG-Mac mailing list >>>>>>> R-SIG-Mac@r-project.org >>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>>> >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
