I'd just like to add that Jeroen's workaround is only temporary: whenever I start a new session, options('repos') becomes @CRAN@ again and I have to manually set it, otherwise, a new crash...
On Thu, 20 May 2021 at 10:28, Renato Morais <renatomoraisara...@gmail.com> wrote: > Hi Simon, > > I'll attach the crash reports available, I hope that helps and sorry > there's probably repeated crash reports, as I repeatedly tried the same > things. > > So, relative to the source packages there's actually nothing I can do for > now? > > Thanks for the attention, > Renato > > On Thu, 20 May 2021 at 08:52, Simon Urbanek <simon.urba...@r-project.org> > wrote: > >> Renato, >> >> just open the Console application (under Utilities) - it has all logs >> from your machine - there will be either an R crash log or some entries in >> the system log. >> >> As for packages, it will be solved once the R 4.1.0 binaries for arm64 >> are released (as soon as all builds finish), but you will have to make sure >> you re-install all packages to remove the pre-releases. >> >> Thanks, >> Simon >> >> >> >> > On 20/05/2021, at 10:27 AM, Renato Morais <renatomoraisara...@gmail.com> >> wrote: >> > >> > Hi Simon, >> > >> > I'm happy to, I'm just not sure how to check previous logs... >> > >> > On another note, and I'm sure this is a problem with the compiler, now >> that my packages are installed, the ones I had to compile from the source >> cannot be loaded. >> > >> > Error: package or namespace load failed for ‘nlme’ in dyn.load(file, >> DLLpath = DLLpath, ...): >> > unable to load shared object >> '/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so': >> > >> >> dlopen(/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so, >> 6): Library not loaded: /opt/R/arm64/gfortran/lib/libgfortran.5.dylib >> > Referenced from: >> /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so >> > Reason: image not found >> > >> > Any insights on how that could be solved? >> > >> > Thanks again for your help, >> > Renato >> > >> > On Thu, 20 May 2021 at 07:00, Simon Urbanek < >> simon.urba...@r-project.org> wrote: >> > Renato, >> > >> > I'm glad you have work-around, but I'd still like to get to the core of >> the issue, we don't want R to crash ;). >> > Can you, please, check your Console log to see if there is a trace of >> the crash and if so, send it to me? >> > Also are you using R in the Terminal or the R.app GUI? >> > >> > Thanks, >> > Simon >> > >> > >> > > On 20/05/2021, at 12:07 AM, Renato Morais < >> renatomoraisara...@gmail.com> wrote: >> > > >> > > Thanks Jeroen, fixing the repo connected me with CRAN (it was >> defaulted to >> > > '@CRAN@' I think)! >> > > >> > > Cheers, >> > > Renato >> > > >> > > On Wed, 19 May 2021 at 21:00, Jeroen Ooms <jer...@berkeley.edu> >> wrote: >> > > >> > >> On Wed, May 19, 2021 at 11:34 AM Renato Morais >> > >> <renatomoraisara...@gmail.com> wrote: >> > >>> >> > >>> Hi all, >> > >>> >> > >>> I'm new here, so please forgive my clumsy error reporting. >> > >>> >> > >>> I have just downloaded *R-4.1-branch.pkg* for my Mac M1, as I >> wanted to >> > >>> finally enjoy a native normal-speed R (for some reason running v >> 4.0.5 on >> > >>> Rosetta was extremely slow on my machine). I also installed the >> latest >> > >>> XQuartz, as indicated (v 2.8.1). >> > >>> >> > >>> Sad story is, when I try a simple install.packages command, it first >> > >>> appears to ignore me, after returning 'Please select a CRAN mirror >> for >> > >> use >> > >>> in this session'. if I insist, it crashes. No useful error messages. >> > >> Trying >> > >>> via the Package Installer tab didn't work either. It doesn't find >> any >> > >>> packages, indeed it crashes if I ask it to load the list. >> > >> >> > >> This indeed sounds like an xQuartz issue, failing to popup the mirror >> > >> selection menu. Does everything work if you manually set your CRAN >> > >> mirror first, e.g: >> > >> >> > >> options(repos=c(CRAN="https://cloud.r-project.org")) >> > >> >> > >> Alternatively you can disable the popup menus all-together using: >> > >> >> > >> options(menu.graphics=FALSE) >> > >> >> > >> Which should probably be the default. >> > >> >> > > >> > > >> > > -- >> > > >> > > *Renato Morais | **ARC Postdoctoral Research Associate* >> > > >> > > Research Hub for Coral Reef Ecosystem Functions >> > > >> > > College of Science and Engineering >> > > >> > > ARC Centre of Excellence for Coral Reef Studies >> > > >> > > James Cook University >> > > >> > > Townsville, Queensland, Australia >> > > >> > > https://www.reeffunctionhub.org >> > > >> > > http://thebellwoodreeffishlab.com >> > > >> > > >> > > >> > > -- >> > > >> > > [[alternative HTML version deleted]] >> > > >> > > _______________________________________________ >> > > R-SIG-Mac mailing list >> > > R-SIG-Mac@r-project.org >> > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > >> > >> > >> > >> > -- >> > Renato Morais | ARC Postdoctoral Research Associate >> > >> > Research Hub for Coral Reef Ecosystem Functions >> > College of Science and Engineering >> > ARC Centre of Excellence for Coral Reef Studies >> > James Cook University >> > Townsville, Queensland, Australia >> > https://www.reeffunctionhub.org >> > http://thebellwoodreeffishlab.com >> > >> > -- >> >> > > -- > > *Renato Morais | **ARC Postdoctoral Research Associate* > > Research Hub for Coral Reef Ecosystem Functions > > College of Science and Engineering > > ARC Centre of Excellence for Coral Reef Studies > > James Cook University > > Townsville, Queensland, Australia > > https://www.reeffunctionhub.org > > http://thebellwoodreeffishlab.com > > > > -- > -- *Renato Morais | **ARC Postdoctoral Research Associate* Research Hub for Coral Reef Ecosystem Functions College of Science and Engineering ARC Centre of Excellence for Coral Reef Studies James Cook University Townsville, Queensland, Australia https://www.reeffunctionhub.org http://thebellwoodreeffishlab.com -- [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac