On 06/09/2021 08:43, Naresh Gurbuxani wrote:
When trying to install library reshape2, I get below messages. But I do have
some other packages which depend upon C compiler (e.g., Rcpp). How can this
problem be fixed?
You need to look in the config.log file. The easiest way to make sure
that is kept is to download the stringi source tarball, unpack it and
run R CMD INSTALL stringi .
Thanks,
Naresh
Messages when trying to install reshape2:
install.packages("reshape2", repos = "https://cran.r-project.org";)
Installing package into ‘/usr/local/lib/R/4.1/site-library’
(as ‘lib’ is unspecified)
also installing the dependencies ‘stringi’, ‘stringr’
trying URL 'https://cran.r-project.org/src/contrib/stringi_1.7.4.tar.gz'
Content type 'application/x-gzip' length 7599762 bytes (7.2 MB)
==================================================
downloaded 7.2 MB
trying URL 'https://cran.r-project.org/src/contrib/stringr_1.4.0.tar.gz'
Content type 'application/x-gzip' length 135777 bytes (132 KB)
==================================================
downloaded 132 KB
trying URL 'https://cran.r-project.org/src/contrib/reshape2_1.4.4.tar.gz'
Content type 'application/x-gzip' length 37307 bytes (36 KB)
==================================================
downloaded 36 KB
* installing *source* package ‘stringi’ ...
** package ‘stringi’ successfully unpacked and MD5 sums checked
** using staged installation
checking for R_HOME... /usr/local/Cellar/r/4.1.1/lib/R
checking for R... /usr/local/Cellar/r/4.1.1/lib/R/bin/R
checking for endianness... little
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for local ICUDT_DIR... icu69/data
checking for gcc... /usr/local/opt/llvm/bin/clang -fopenmp
checking whether the C compiler works... no
configure: error: in
`/private/var/folders/97/5377j5_d207fshvjz_pz7szw0000gn/T/RtmpCOKBRx/R.INSTALL64822d9c75a/stringi':
configure: error: C compiler cannot create executables
See `config.log' for more details
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib/R/4.1/site-library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib/R/4.1/site-library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘reshape2’
* removing ‘/usr/local/lib/R/4.1/site-library/reshape2’
The downloaded source packages are in
‘/private/var/folders/97/5377j5_d207fshvjz_pz7szw0000gn/T/RtmpDOExfD/downloaded_packages’
Warning messages:
1: In install.packages("reshape2", repos = "https://cran.r-project.org";) :
installation of package ‘stringi’ had non-zero exit status
2: In install.packages("reshape2", repos = "https://cran.r-project.org";) :
installation of package ‘stringr’ had non-zero exit status
3: In install.packages("reshape2", repos = "https://cran.r-project.org";) :
installation of package ‘reshape2’ had non-zero exit status
My session info:
sessionInfo()
R version 4.1.1 (2021-08-10)
Platform: x86_64-apple-darwin20.5.0 (64-bit)
Running under: macOS Big Sur 11.5.2
Matrix products: default
BLAS/LAPACK: /usr/local/Cellar/openblas/0.3.17/lib/libopenblasp-r0.3.17.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.1.1 tools_4.1.1
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Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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