You might try update.packages(type="binary"). Also, install.packages() in RStudio is not utils:::install.packages(), and is known to get its knickers in a twist sometimes, but I don't know which one of them is getting called by update.packages().
-pd > On 4 Apr 2025, at 08.47, Gavin Simpson <ucfa...@gmail.com> wrote: > > Hi Spencer, > > I don't see a response to this, but I am too seeing this on my M3 Macbook > Air. > > It looks to me like this is update.packages() looking at whether a package > is outdated but then downloading the latest Mac binary. I don't know if > this is because I've not got my system set up to build from sources or not > (I mostly use the binaries but I can build packages by hand so *shrug* - > I'm very new to Macs). > > The packages this is affecting right now are all packages that got updated > a day or two ago and for which the mac binaries are not yet available. > > All the best > > G > > On Thu, 14 Nov 2024 at 19:41, Spencer Graves <spencer.gra...@prodsyse.com> > wrote: > >> Hello, All: >> >> >> "update.packages()" now identifies 6 packages with updates but >> re-downloads the old version. In the output copied below starting, "Thu >> Nov 14 06:48:15 2024", it invited me to update curl, Ecfun, NLP, >> packageRank, slam, and terra. I said yes to all. Then it reinstalled the >> old version, not the new, for each. Then I repeated the procedure >> starting "Thu Nov 14 06:48:33 2024", 28 seconds later, with the same >> results. >> >> >> I've noticed this problem roughly 2 days ago. At that time, it >> downloaded several packages, some correctly but two (Ecfun and terra) >> incorrectly, as here. This was shortly after I got your email saying, >> "Your package Ecfun_0.3-6.tar.gz has been built for Windows and will be >> published within 24 hours in the corresponding CRAN directory." >> >> >> sessionInfo() is also provided below. >> >> >> I asked Uwe Ligges, who suggested I "ask on a sig-mac mailing >> list if >> this is know (to Simon in particular)?" Uwe added, "I can only tell >> about source packages (as used under Linux) and Windows binaries where >> this should never happen." >> >> >> What do you think? >> >> >> Thanks, >> Spencer Graves >> >> >> p.s. I very much appreciate this great R community. People live better >> the world over because of good statistical analyses that may not have >> been done -- or done as well -- without R and CRAN. >> >> >> *** DOCUMENTATION OF WHAT I SAW: >> >> >>> date() >> [1] "Thu Nov 14 06:48:15 2024" >>> update.packages() >> curl : >> Version 6.0.0 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 6.0.1 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> Ecfun : >> Version 0.3-2 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.3-6 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> NLP : >> Version 0.3-0 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.3-1 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> packageRank : >> Version 0.9.3 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.9.4 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> slam : >> Version 0.1-54 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.1-55 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> terra : >> Version 1.7-78 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 1.7-83 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/curl_6.0.0.tgz >> ' >> Content type 'application/x-gzip' length 832416 bytes (812 KB) >> ================================================== >> downloaded 812 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/Ecfun_0.3-2.tgz >> ' >> Content type 'application/x-gzip' length 1245104 bytes (1.2 MB) >> ================================================== >> downloaded 1.2 MB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/NLP_0.3-0.tgz >> ' >> Content type 'application/x-gzip' length 396405 bytes (387 KB) >> ================================================== >> downloaded 387 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/packageRank_0.9.3.tgz >> ' >> Content type 'application/x-gzip' length 3504704 bytes (3.3 MB) >> ================================================== >> downloaded 3.3 MB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/slam_0.1-54.tgz >> ' >> Content type 'application/x-gzip' length 212778 bytes (207 KB) >> ================================================== >> downloaded 207 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/terra_1.7-78.tgz >> ' >> Content type 'application/x-gzip' length 97585776 bytes (93.1 MB) >> ================================================== >> downloaded 93.1 MB >> >> >> The downloaded binary packages are in >> >> /var/folders/2n/zqk768wj3818l8x2wttbc5kw0000gn/T//Rtmp7DqHrd/downloaded_packages >>> >>> >>> date() >> [1] "Thu Nov 14 06:48:33 2024" >>> update.packages() >> curl : >> Version 6.0.0 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 6.0.1 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> Ecfun : >> Version 0.3-2 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.3-6 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> NLP : >> Version 0.3-0 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.3-1 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> packageRank : >> Version 0.9.3 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.9.4 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> slam : >> Version 0.1-54 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 0.1-55 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> terra : >> Version 1.7-78 installed in >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library >> Version 1.7-83 available at https://cran.rstudio.com >> Update? (Yes/no/cancel) y >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/curl_6.0.0.tgz >> ' >> Content type 'application/x-gzip' length 832416 bytes (812 KB) >> ================================================== >> downloaded 812 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/Ecfun_0.3-2.tgz >> ' >> Content type 'application/x-gzip' length 1245104 bytes (1.2 MB) >> ================================================== >> downloaded 1.2 MB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/NLP_0.3-0.tgz >> ' >> Content type 'application/x-gzip' length 396405 bytes (387 KB) >> ================================================== >> downloaded 387 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/packageRank_0.9.3.tgz >> ' >> Content type 'application/x-gzip' length 3504704 bytes (3.3 MB) >> ================================================== >> downloaded 3.3 MB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/slam_0.1-54.tgz >> ' >> Content type 'application/x-gzip' length 212778 bytes (207 KB) >> ================================================== >> downloaded 207 KB >> >> trying URL >> ' >> https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.4/terra_1.7-78.tgz >> ' >> Content type 'application/x-gzip' length 97585776 bytes (93.1 MB) >> ================================================== >> downloaded 93.1 MB >> >> >> The downloaded binary packages are in >> >> /var/folders/2n/zqk768wj3818l8x2wttbc5kw0000gn/T//Rtmp7DqHrd/downloaded_packages >>> >>> >>> >>> sessionInfo() >> R version 4.4.2 (2024-10-31) >> Platform: aarch64-apple-darwin20 >> Running under: macOS Sequoia 15.0.1 >> >> Matrix products: default >> BLAS: >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib >> >> >> LAPACK: >> /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; >> >> LAPACK version 3.12.0 >> >> locale: >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >> >> time zone: America/Chicago >> tzcode source: internal >> >> attached base packages: >> [1] stats graphics grDevices utils datasets >> [6] methods base >> >> loaded via a namespace (and not attached): >> [1] compiler_4.4.2 tools_4.4.2 >> >> >> On 11/12/24 04:48, lig...@statistik.tu-dortmund.de wrote: >>> Dear package maintainer, >>> >>> this notification has been generated automatically. >>> Your package Ecfun_0.3-6.tar.gz has been built for Windows and >>> will be published within 24 hours in the corresponding CRAN directory. >>> R version 4.4.2 (2024-10-31 ucrt) >>> >>> All the best, >>> Uwe Ligges >>> (Maintainer of binary packages for Windows) >>> >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > > -- > Gavin Simpson, PhD [he/him/his] > [tw] @ucfagls [OrciD] 0000-0002-9084-8413 > [web] fromthebottomoftheheap.net > • Assistant Professor > • Department of Animal & Veterinary Sciences, Aarhus University > • Adjunct Professor, Department of Biology, University of Regina. > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business SchoolSolbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd....@cbs.dk Priv: pda...@gmail.com _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
