> Subject: Re: [R-SIG-Mac] R 2.1.1 available in DarwinPorts > > I just tried building from darwin ports today, and got the error below > while bulding R. To confirm, this is for darwin ports on Tiger, right? > Any help appreciated, looks like there is some kind of symbol conflict.
i got the same error when i tried a build a couple of days ago -- i hadn't had time to get back to it yet. [and i have a radmind overload of darwinports that contains a working R (from previous build attempt), so i wasn't in a hurry to break it either...] Kjell, are there things we can do to help you? Other than to continue testing? :) --elijah > ---> Fetching gcc34 > ---> Attempting to fetch gcc-3.4.4.tar.bz2 from ftp://ftp.gnu.org/ > gnu//gcc/gcc-3.4.4 > ---> Verifying checksum(s) for gcc34 > ---> Extracting gcc34 > ---> Applying patches to gcc34 > ---> Configuring gcc34 > ---> Building gcc34 with target bootstrap-lean > ---> Staging gcc34 into destroot > ---> Packaging tgz archive for gcc34 3.4.4_0+darwin_8 > ---> Installing gcc34 3.4.4_0+darwin_8 > ---> Activating gcc34 3.4.4_0+darwin_8 > ---> Cleaning gcc34 > ---> Fetching gettext > ---> Attempting to fetch gettext-0.14.5.tar.gz from ftp:// > ftp.gnu.org/gnu/gettext > ---> Verifying checksum(s) for gettext > ---> Extracting gettext > ---> Configuring gettext > ---> Building gettext with target all > ---> Staging gettext into destroot > ---> Packaging tgz archive for gettext 0.14.5_0 > ---> Installing gettext 0.14.5_0 > ---> Activating gettext 0.14.5_0 > ---> Cleaning gettext > ---> Fetching graphviz > ---> Attempting to fetch graphviz-2.2.1.tar.gz from http:// > www.graphviz.org/pub/graphviz/ARCHIVE/ > ---> Verifying checksum(s) for graphviz > ---> Extracting graphviz > ---> Configuring graphviz > ---> Building graphviz with target all > ---> Staging graphviz into destroot > ---> Packaging tgz archive for graphviz 2.2.1_4 > ---> Installing graphviz 2.2.1_4 > ---> Activating graphviz 2.2.1_4 > ---> Cleaning graphviz > ---> Fetching texi2html > ---> Attempting to fetch texi2html-1.76.tar.gz from http:// > savannah.nongnu.org/download/texi2html > ---> Verifying checksum(s) for texi2html > ---> Extracting texi2html > ---> Configuring texi2html > ---> Building texi2html with target all > ---> Staging texi2html into destroot > ---> Packaging tgz archive for texi2html 1.76_3 > ---> Installing texi2html 1.76_3 > ---> Activating texi2html 1.76_3 > ---> Cleaning texi2html > ---> Fetching texinfo > ---> Attempting to fetch texinfo-4.8.tar.bz2 from ftp://ftp.gnu.org/ > gnu/texinfo > ---> Verifying checksum(s) for texinfo > ---> Extracting texinfo > ---> Configuring texinfo > ---> Building texinfo with target all > ---> Staging texinfo into destroot > ---> Packaging tgz archive for texinfo 4.8_1 > ---> Installing texinfo 4.8_1 > ---> Activating texinfo 4.8_1 > ---> Cleaning texinfo > ---> Fetching teTeX > ---> Attempting to fetch tetex-src-3.0.tar.gz from ftp:// > tug.ctan.org/tex-archive/systems/unix/teTeX/current/distrib/ > ---> Attempting to fetch tetex-texmf-3.0.tar.gz from ftp:// > tug.ctan.org/tex-archive/systems/unix/teTeX/current/distrib/ > ---> Verifying checksum(s) for teTeX > ---> Extracting teTeX > ---> Configuring teTeX > ---> Building teTeX with target all > ---> Staging teTeX into destroot > ---> Packaging tgz archive for teTeX 3.0_0 > ---> Installing teTeX 3.0_0 > ---> Activating teTeX 3.0_0 > ---> Cleaning teTeX > ---> Fetching R > ---> Attempting to fetch R-2.1.1.tar.gz from http://cran.r- > project.org/src/base/R-2/ > ---> Verifying checksum(s) for R > ---> Extracting R > ---> Configuring R > ---> Building R with target all > Error: Target com.apple.build returned: shell command "cd "/opt/local/ > var/db/dports/build/ > file._opt_local_var_db_dports_sources_rsync.rsync.opendarwin.org_dpupdat > e_dports_math_R/work/R-2.1.1" && make all" returned error 2 > Command output: gcc-3.3 -I../../src/extra/zlib -I../../src/extra/ > bzip2 -I../../src/extra/pcre -no-cpp-precomp -I. -I../../src/include > -I../../src/include -I/opt/local/include -DHAVE_CONFIG_H -fno- > common -g -O2 -c startup.c -o startup.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > subassign.c -o subassign.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > subscript.c -o subscript.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > subset.c -o subset.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > summary.c -o summary.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > sysutils.c -o sysutils.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > unique.c -o unique.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > util.c -o util.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > version.c -o version.lo > gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/ > extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/ > include -I/opt/local/include -DHAVE_CONFIG_H -fno-common -g -O2 -c > vfonts.c -o vfonts.lo > g77-dp-3.4 -fno-common -g -O2 -c xxxpr.f -o xxxpr.lo > gcc-3.3 -dynamiclib -L/opt/local/lib -dynamiclib -install_name > libR.dylib -compatibility_version 2.1.0 -current_version 2.1.1 - > headerpad_max_install_names -o libR.dylib Rembedded.lo > CConverters.lo CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo > apply.lo arithmetic.lo apse.lo array.lo attrib.lo base.lo bind.lo > builtin.lo character.lo coerce.lo colors.lo complex.lo connections.lo > context.lo cov.lo cum.lo dcf.lo datetime.lo debug.lo deparse.lo > deriv.lo dotcode.lo dounzip.lo dstruct.lo duplicate.lo engine.lo > envir.lo errors.lo eval.lo format.lo fourier.lo gevents.lo gram.lo > gram-ex.lo graphics.lo identical.lo internet.lo iosupport.lo > lapack.lo list.lo logic.lo main.lo mapply.lo match.lo memory.lo > model.lo names.lo objects.lo optim.lo optimize.lo options.lo par.lo > paste.lo pcre.lo platform.lo plot.lo plot3d.lo plotmath.lo print.lo > printarray.lo printvector.lo printutils.lo qsort.lo random.lo > regex.lo registration.lo relop.lo saveload.lo scan.lo seq.lo > serialize.lo size.lo sort.lo source.lo split.lo sprintf.lo startup.lo > subassign.lo subscript.lo subset.lo summary.lo sysutils.lo unique.lo > util.lo version.lo vfonts.lo xxxpr.lo `ls ../appl/*.lo ../nmath/ > *.lo ../unix/*.lo 2>/dev/null` -framework vecLib -L/opt/local/lib/ > gcc-3.4/gcc/powerpc-apple-darwin8.2.0/3.4.4 -L/opt/local/lib/gcc-3.4 - > lg2c -lgcc_s -lSystemStubs -lSystem ../extra/zlib/libz.a ../extra/ > bzip2/libbz2.a ../extra/pcre/libpcre.a -lintl -liconv -lc - > lreadline -lm -liconv > ld: warning prebinding disabled because dependent library: /opt/local/ > lib/gcc-3.4/libg2c.0.dylib is not prebound > ld: warning multiple definitions of symbol _xerbla_ > print.lo definition of _xerbla_ in section (__TEXT,__text) > /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ > vecLib.framework/Versions/A/libBLAS.dylib(single module) definition > of _xerbla_ > ld: warning multiple definitions of symbol _locale_charset > /opt/local/lib/libiconv.dylib(localcharset.o) definition of > _locale_charset > /opt/local/lib/libintl.dylib(localcharset.o) definition of > _locale_charset > ld: warning multiple definitions of symbol _signgam > ../nmath/lgamma.lo definition of _signgam in section (__DATA,__common) > /usr/lib/libSystem.dylib(gamma9.o) definition of _signgam > ld: Undefined symbols: > restFP > saveFP > /usr/bin/libtool: internal link edit command failed > make[3]: *** [libR.dylib] Error 1 > make[2]: *** [R] Error 2 > make[1]: *** [R] Error 1 > make: *** [R] Error 1 > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
