I experienced a similar problem: compiled R from source using instructions from http:// wiki.urbanek.info/index.cgi?IntelMacR installed RODBC from source via install.packages() [using the R GUI] - got the error about the versioning of Darwin installed RODBC from binary - got a similar (but different version incompatibility) error about versioning installed from Terminal, using "R CMD INSTALL RODBC_1.1-7.tar.gz" - it finally worked
Maybe some gurus can tell us why install.packages and RCMD INSTALL result in different versions being compiled? Hope this is useful Ivan On 6 Jul 2006, at 18:38, Randall C Johnson [Contr.] wrote: > Hello, > I did install R from the CRAN universal binary, but had installed > RODBC from > source. Perhaps there were other problems with my installation as > well...? > Anyhow, when I deleted and re-installed R again from the binary and > started > out with the RODBC binary everything worked just fine. > > Thanks, > Randy > > > On 7/6/06 9:48 AM, "Simon Urbanek" <[EMAIL PROTECTED]> > wrote: > >> Randy, >> >> On Jul 5, 2006, at 11:43 AM, Randall C. Johnson [Contr] wrote: >> >>> I recently installed RODBC (binary) on my G4 PowerBook, and I am >>> not able to load the library (I thought I had it working at one >>> point). I also tried installing from source, but I have other >>> issues there... Any ideas? I did upgrade to 10.4.7 this morning, >>> could that have something to do with it? >>> >>>> library(RODBC) # binary installation >>> Error: package 'RODBC' was built for universal-apple-darwin8.6.1 >>> >> >> It seems that you have compiled R from sources as non-universal >> binary, so you're pretty much on your own, because that is not >> compatible with the CRAN binary of R. >> >> >>>> library(RODBC) # source installation >>> Error in dyn.load(x, as.logical(local), as.logical(now)) : >>> unable to load shared library >>> '/Library/Frameworks/R.framework/Versions/2.3/Resources/library/ >>> RODBC/libs/R ODBC.so': >>> >>> dlopen(/Library/Frameworks/R.framework/Versions/2.3/Resources/ >>> library/RODBC/libs/RODBC.so, 6): Symbol not found: _libintl_dgettext >> >> Pretty much the same answer - try re-compiling R and RODBC (also >> don't forget to delete the previously installed binary package!). >> According to the log you're using fink which supplies its own libintl >> so my guess would be that it's one of the problems. It's not uncommon >> that things break in fink after OS updates, but that's just a wild >> guess, so you may want to update your fink as well (or don't use it >> for R - sometimes it causes more harm than good due to compiler >> issues). >> >> If you want to avoid having to compile everything yourself, my actual >> recommendation would be to use the CRAN binary to avoid problems like >> that, so you can use binary packages. >> >> Cheers, >> Simon >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Randall C Johnson > Bioinformatics Analyst > SAIC-Frederick, Inc (Contractor) > Laboratory of Genomic Diversity > NCI-Frederick, P.O. Box B > Bldg 560, Rm 11-85 > Frederick, MD 21702 > Phone: (301) 846-1304 > Fax: (301) 846-1686 > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
