Below (graphviz1.out) the dylibs that get loaded. And the file I sourced in. The plot(g1, "dot") produced the usual plot (until now I have always been using version Graphviz-2.3), the
plot(g1, "neato") causes the bus error/invalid address.


Regards,
Rob


Attachment: graphviz.R
Description: Binary data

Attachment: graphviz1.out
Description: Binary data



On Aug 21, 2006, at 8:03 AM, Simon Urbanek wrote:

FWIW: if you want to know which dylibs get loaded, start R like this:

DYLD_PRINT_LIBRARIES=1 R

Seth, which architecture are you using (ppc/i386)?

Cheers,
S

On Aug 21, 2006, at 10:45 AM, Seth Falcon wrote:

Rob J Goedman <[EMAIL PROTECTED]> writes:

I  see the exact same behavior. In this example, plot(g1, "dot")
works fine, but as soon as "neato"
or "twopi" is selected:

Host Name:      Robs-Laptop
Date/Time:      2006-08-18 21:29:07.564 -0700
OS Version:     10.4.7 (Build 8J135)
Report Version: 4

Command: R
Path: /Users/rob/Projects/Mac-GUI/build/Development/R.app/ Contents/
MacOS/R
Parent:  WindowServer [99]

Version: 1.17-pre (3415)

PID:    18865
Thread: 0

Exception:  EXC_BAD_ACCESS (0x0001)
Codes:      KERN_PROTECTION_FAILURE (0x0002) at 0x00000000

Thread 0 Crashed:
0   libpack.2.dylib                     0x04fb50d4 packGraphs + 240
(pack.c:778)
1   libpack.2.dylib                     0x04fb5324 packSubgraphs + 32
(pack.c:827)
2   ...plugin_neato_layout.2.dylib      0x06b5ad34 twopi_layout + 408
(twopiinit.c:118)
3   libgvc.2.dylib                      0x06807510 gvLayoutJobs + 100
(gvlayout.c:69)
4 libgvc.2.dylib 0x0680a604 gvLayout + 64 (gvc.c:71)
5   Rgraphviz.so                        0x04f3b754 Rgraphviz_doLayout
+  508 (Rgraphviz.c:429)
...

Happens both with the the binaries from Simon's web site + the
Rgraphiz binary and if I build
them from sources.

I can't reproduce it on my system where I've built everything from
source.  I'm not convinced the tests you've done are what you think
they are.  R can be very tricky in how it forces certain libs to get
picked up.

Can anyone else reproduce and provide details on versions of graphviz,
Rgraphviz, R...

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