On Sep 14, 2006, at 4:20 PM, Simon Urbanek wrote: > > On Sep 14, 2006, at 3:23 PM, Steven McKinney wrote: > >> >> Forwarding to r-sig-mac >> >> Anyone else have problems with the Quartz graphics display >> generated from R.app, running the example from new package 'splots' ? >> > > IMHO it's a bug in splots: > > grid.rect(0.5, 0.5, 1, 1, gp = gpar(col = abris)) > ^-- this will fill the whole area with the default fill color which > is white: >> get.gpar()$fill > [1] "white" > > I guess it should read > grid.rect(0.5, 0.5, 1, 1, gp = gpar(col = abris, fill=NULL)) >
Actually it should be fill="transparent" I presume [gpar(fill=NULL) returns an empty list despite the docs indicating otherwise .. hmm... an issue with grid as well?]. Cheers, Simon >> -----Original Message----- >> From: [EMAIL PROTECTED] on behalf of Steven >> McKinney >> Sent: Wed 9/13/2006 12:21 PM >> To: Oleg Sklyar; [EMAIL PROTECTED] >> Subject: Re: [Bioc-devel] splots -- new package announcement >> >> Hi Oleg, >> >> As I have some 96 well plate data to look at >> right now, I downloaded your package. >> >> Unfortunately I am having trouble on >> Mac OS X 10.4.7 and Rapp 2.3.1 >> >> If I run your example, >> >>> data(splots.screen) >>> plotScreen(screen, 3) >> >> I get a Quartz screen with 12 grey >> rectangles, subtitled 'datasetnn', >> (nn = 1, 2, ... 12) >> all white otherwise. >> >> If I resize the screen, I briefly see coloured >> rectangles within the grey borders, but then white >> returns and all is blank. >> >> I also tried printing to a PDF file, which worked >> properly, so I can at least do that. >> >> Anyone have similar problems with other plots? >> Is this an Rapp/Quartz issue only? Have I set up >> something inappropriately? >> >> Any insights appreciated. >> >> >> >> >> >> >>> version >> _ >> platform powerpc-apple-darwin8.6.0 >> arch powerpc >> os darwin8.6.0 >> system powerpc, darwin8.6.0 >> status >> major 2 >> minor 3.1 >> year 2006 >> month 06 >> day 01 >> svn rev 38247 >> language R >> version.string Version 2.3.1 (2006-06-01) >> >> >> >> >> >> >> >> Steven McKinney >> >> Statistician >> Molecular Oncology and Breast Cancer Program >> British Columbia Cancer Research Centre >> >> email: [EMAIL PROTECTED] >> >> tel: 604-675-8000 x7561 >> >> BCCRC >> Molecular Oncology >> 675 West 10th Ave, Floor 4 >> Vancouver B.C. >> V5Z 1L3 >> Canada >> >> >> >> >> -----Original Message----- >> From: [EMAIL PROTECTED] on behalf of Oleg Sklyar >> Sent: Wed 9/13/2006 7:32 AM >> To: [EMAIL PROTECTED] >> Subject: [Bioc-devel] splots -- new package announcement >> >> Hi all, >> >> a couple of weeks ago I submitted a yet tiny new package, splots, >> that >> aims to deliver different plotting routines for high-throughput >> screens >> independently of analysis packages. The idea is too have a separate >> plotting package with a minimum dependencies that would allow for >> nice >> plots of screen-like data (what is currently done by parts of >> cellHTS, >> prada etc). >> >> The package has now passed through build/check and therefore I am >> announcing it. >> >> At the moment, the package contains one single function, plotScreen, >> which is a grid-graphics implementation of a similar function from >> cellHTS (credit to Ligia Breas for the idea!), and it stays this >> way for >> the release. However I will add a couple of functions in the later >> devel >> version as time allows. >> >> I would be really happy if the package attract not only users but >> developers as well. Feel free to participate in package development, >> adding new functions, or simply using it. >> >> Best, >> Oleg >> >> -- >> Dr. Oleg Sklyar | EBI, Cambridge CB10 1SD, England | +44-1223-494466 >> >> _______________________________________________ >> [EMAIL PROTECTED] mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> _______________________________________________ >> [EMAIL PROTECTED] mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
