Hello all,
I've tried to check with BioConductor and the archives here at r-sig-mac with
no success. The problem is that when attempting to plot data with the hexbin
library (or package, I'm new at this) R crashes after a few minutes. The crash
is sped up when the quartz window is resized. The crash report is included
below. If this action is determined to be the fault of hexbin, Where on
BioConductor, or elsewhere, would I look for more information? I'm assuming
this is a R issue because the data is always plotted before the crash. In
addition, the crash occurs using the examples in hexbin's Vignettes. If anyone
has any help or suggestions it would be greatly appreciated.
Pete Phanor
Date/Time: 2007-02-22 21:32:11.261 -0600
OS Version: 10.4.8 (Build 8L127)
Report Version: 4
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Parent: WindowServer [76]
Version: R 2.4.1 GUI 1.18 (4038)
PID: 423
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000004
Thread 0 Crashed:
0 com.apple.Foundation 0x9295efd8 _NSAddAltHandler2 + 356
1 com.apple.AppKit 0x9377300c -[NSFocusStack
focusView:inWindow:] + 244
2 com.apple.AppKit 0x937718a4 -[NSView lockFocusIfCanDraw]
+ 652
3 com.apple.AppKit 0x9377158c -[NSView lockFocus] + 40
4 com.apple.AppKit 0x9376cff8 -[NSView
_displayRectIgnoringOpacity:isVisibleRect:rectIsVisibleRectForView:] + 292
5 com.apple.AppKit 0x93762348 -[NSView displayIfNeeded] +
248
6 com.apple.AppKit 0x937621b8 -[NSWindow displayIfNeeded]
+ 180
7 com.apple.AppKit 0x93762064 _handleWindowNeedsDisplay +
200
8 com.apple.CoreFoundation 0x907dc73c __CFRunLoopDoObservers + 352
9 com.apple.CoreFoundation 0x907dc9dc __CFRunLoopRun + 420
10 com.apple.CoreFoundation 0x907dc47c CFRunLoopRunSpecific + 268
11 com.apple.HIToolbox 0x93205740 RunCurrentEventLoopInMode +
264
12 com.apple.HIToolbox 0x93204d4c ReceiveNextEventCommon + 244
13 com.apple.HIToolbox 0x93204c40
BlockUntilNextEventMatchingListInMode + 96
14 com.apple.AppKit 0x9372eae4 _DPSNextEvent + 384
15 com.apple.AppKit 0x9372e7a8 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
16 org.R-project.R 0x0000dd18 -[RController
doProcessEvents:] + 104 (RController.m:1962)
17 org.R-project.R 0x0000b2a4 -[RController
handleReadConsole:] + 100 (RController.m:925)
18 org.R-project.R 0x0002ed8c Re_ReadConsole + 108
(Rcallbacks.m:137)
19 org.R-project.R 0x000355b8 run_REngineRmainloop + 312
(Rinit.c:379)
20 org.R-project.R 0x0002d45c -[REngine runREPL] + 76
(REngine.m:175)
21 org.R-project.R 0x0001e774 main + 692 (main.m:109)
22 org.R-project.R 0x000021ec _start + 760
23 org.R-project.R 0x00001ef0 start + 48
Thread 1:
0 libSystem.B.dylib 0x9000ab48 mach_msg_trap + 8
1 libSystem.B.dylib 0x9000aa9c mach_msg + 60
2 com.apple.CoreFoundation 0x907dcb78 __CFRunLoopRun + 832
3 com.apple.CoreFoundation 0x907dc47c CFRunLoopRunSpecific + 268
4 com.apple.Foundation 0x92954598 -[NSConnection
sendInvocation:] + 1468
5 com.apple.Foundation 0x92953034
-[NSObject(NSForwardInvocation) forward::] + 408
6 libobjc.A.dylib 0x90a440b0 _objc_msgForward + 176
7 com.apple.Foundation 0x9295339c -[NSDistantObject
methodSignatureForSelector:] + 268
8 com.apple.Foundation 0x92952f04
-[NSObject(NSForwardInvocation) forward::] + 104
9 libobjc.A.dylib 0x90a440b0 _objc_msgForward + 176
10 org.R-project.R 0x0000a75c -[RController readThread:] +
2604 (RController.m:669)
11 com.apple.Foundation 0x9295f194 forkThreadForFunction + 108
12 libSystem.B.dylib 0x9002b508 _pthread_body + 96
Thread 2:
0 libSystem.B.dylib 0x9002bbc8 semaphore_wait_signal_trap +
8
1 libSystem.B.dylib 0x900306ac pthread_cond_wait + 480
2 com.apple.Foundation 0x92966300 -[NSConditionLock
lockWhenCondition:] + 68
3 com.apple.AppKit 0x937cb708 -[NSUIHeartBeat
_heartBeatThread:] + 324
4 com.apple.Foundation 0x9295f194 forkThreadForFunction + 108
5 libSystem.B.dylib 0x9002b508 _pthread_body + 96
Thread 3:
0 libSystem.B.dylib 0x9002e88c kevent + 12
1 com.apple.DesktopServices 0x92872eb0
TFSNotificationTask::FSNotificationTaskProc(void*) + 56
2 ...ple.CoreServices.CarbonCore 0x90bc48c4 PrivateMPEntryPoint + 76
3 libSystem.B.dylib 0x9002b508 _pthread_body + 96
Thread 4:
0 libSystem.B.dylib 0x9002bbc8 semaphore_wait_signal_trap +
8
1 libSystem.B.dylib 0x900306ac pthread_cond_wait + 480
2 ...ple.CoreServices.CarbonCore 0x90bc4ab4 MPWaitOnQueue + 224
3 com.apple.DesktopServices 0x9287352c
TNodeSyncTask::SyncTaskProc(void*) + 116
4 ...ple.CoreServices.CarbonCore 0x90bc48c4 PrivateMPEntryPoint + 76
5 libSystem.B.dylib 0x9002b508 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x000000009295efd8 srr1: 0x000000000000d030
vrsave: 0x0000000000000000
cr: 0x82004222 xer: 0x0000000020000002 lr: 0x000000009295ef58
ctr: 0x0000000090000fa0
r0: 0x0000000000000000 r1: 0x00000000bfffeac0 r2: 0x00000000a2952ad4
r3: 0x0000000000000000
r4: 0x0000000000000000 r5: 0x000000000000000d r6: 0x00000000fffffff6
r7: 0x0000000000000003
r8: 0x0000000064383800 r9: 0x00000000bfffe8e5 r10: 0x0000000000000001
r11: 0x00000000a00061ec
r12: 0x0000000090000fa0 r13: 0x0000000000000000 r14: 0x0000000000000001
r15: 0x0000000000000000
r16: 0x0000000000000001 r17: 0x00000000bffff670 r18: 0x0000000000000000
r19: 0x000000000053d260
r20: 0x0000000000000000 r21: 0x0000000000510130 r22: 0x0000000000000002
r23: 0x0000000000510248
r24: 0x0000000000510240 r25: 0x0000000090aa0018 r26: 0x00000000005cf730
r27: 0x0000000093a78774
r28: 0x0000000000507910 r29: 0x0000000000518320 r30: 0x0000000000000000
r31: 0x000000009295ee7c
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Parallel ATA Device: MATSHITACD-RW CW-8123,
Parallel ATA Device: TOSHIBA MK6025GAS, 55.89 GB
USB Device: Bluetooth HCI, , Up to 12 Mb/sec, 500 mA
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