Dear all, I am trying to install the development version of lme4, without success (see below).
I get the same error when installing the package direct from the desktop. I suspect the problem may be with gfortran. I downloaded version 4.2.1(from http://r.research.att.com/tools/) and installed it using the installer. However, typing "gfortran --version" in Terminal returns an error ("-bash: gfortran: command not found"). I have gcc version 4.0.1. Any suggestions for the solution? Best wishes, Nick Isaac >install.packages("lme4", repos = "http://r-forge.r-project.org";, type="source") trying URL 'http://r-forge.r-project.org/src/contrib/lme4_0.999375-4.tar.gz' Content type 'application/x-gzip' length 626663 bytes (611 Kb) opened URL ================================================== downloaded 611 Kb WARNING: ignoring environment value of R_HOME * Installing *source* package 'lme4' ... ** libs ** arch - i386 gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -march=nocona -c init.c -o init.o gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -march=nocona -c lmer.c -o lmer.o gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -march=nocona -c local_stubs.c -o local_stubs.o gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -lgcc_s.10.4 -F/Library/Frameworks/R.framework/.. -framework R ** arch - ppc gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -c init.c -o init.o /usr/bin/libtool: for architecture ppc object: /Library/Frameworks/R.framework/Resources/lib/i386/libRlapack.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture: (null) file: -lRlapack is not an object file (not allowed in a library) /usr/bin/libtool: for architecture i386 object: /Library/Frameworks/R.framework/Resources/lib/i386/libRlapack.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture i386 object: /Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture: (null) file: -lRblas is not an object file (not allowed in a library) /usr/bin/libtool: for architecture ppc object: /Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib malformed object (unknown load command 11) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgfortran.dylib malformed object (unknown load command 4) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4) make: *** [lme4.so] Error 1 chmod: /Library/Frameworks/R.framework/Versions/2.6/Resources/library/lme4/libs/i386/*: No such file or directory gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -c lmer.c -o lmer.o gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.6/Resources/library/Matrix/include" -fPIC -g -O2 -c local_stubs.c -o local_stubs.o The downloaded packages are in /private/tmp/RtmpMu8Z9H/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.packages("lme4", repos = "http://r-forge.r-project.org";, : installation of package 'lme4' had non-zero exit status gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lgcc_s.10.4 -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R ** Removing '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/lme4' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/lme4' /usr/bin/libtool: for architecture ppc object: /Library/Frameworks/R.framework/Resources/lib/ppc/libRlapack.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture: (null) file: -lRlapack is not an object file (not allowed in a library) /usr/bin/libtool: for architecture i386 object: /Library/Frameworks/R.framework/Resources/lib/ppc/libRlapack.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture i386 object: /Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib malformed object (unknown load command 12) /usr/bin/libtool: for architecture: (null) file: -lRblas is not an object file (not allowed in a library) /usr/bin/libtool: for architecture ppc object: /Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib malformed object (unknown load command 11) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgfortran.dylib malformed object (unknown load command 4) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4) /usr/bin/libtool: for architecture cputype (16777223) cpusubtype (3) object: /usr/local/lib/libgcc_s.10.4.dylib malformed object (unknown load command 4) make: *** [lme4.so] Error 1 chmod: /Library/Frameworks/R.framework/Versions/2.6/Resources/library/lme4/libs/ppc/*: No such file or directory ERROR: compilation failed for package 'lme4' > sessionInfo() R version 2.6.2 (2008-02-08) i386-apple-darwin8.10.1 locale: en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.6.2 [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
