Hrm. Well, I just tried that, but got the following output Warning in install.packages("lme4", repos = "http://R-Forge.R-project.org ") : argument 'lib' is missing: using '/Users/jearbear/R/powerpc-apple- darwin8.10.1-library/2.7' Warning: unable to access index for repository http://R-Forge.R-project.org/bin/macosx/universal/contrib/2.7 Warning message: package ‘lme4’ is not available
This might be a versioning issue (I installed 2.7 the other day - maybe I should go back!) but, what is up with the argument lib being missing? Odd... I also had an odd error when installing Matrix from source * Installing *source* package 'Matrix' ... ** libs ** arch - ppc gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/ Resources/include -I/Library/Frameworks/R.framework/Resources/include/ ppc -I/usr/local/include -I./UFconfig -fPIC -g -O2 -c CHMfactor.c - o CHMfactor.o cc1: error: invalid option ‘macosx-version-min=10.4’ make: *** [CHMfactor.o] Error 1 ERROR: compilation failed for package 'Matrix' ** Removing '/Users/jearbear/R/powerpc-apple-darwin8.10.1-library/2.7/ Matrix' The downloaded packages are in /private/tmp/RtmpLqlbKP/downloaded_packages Warning message: In install.packages("Matrix", repos = "http://R-Forge.R-project.org", : installation of package 'Matrix' had non-zero exit status What's up with the cc1 error? Suggestions? On Apr 24, 2008, at 5:57 PM, Steven McKinney wrote: > Hi Jarrett, > > I was able to install the R-forge lme4 and Matrix > packages by invoking R from a Terminal window > (I used $ sudo R > so the process would have enough privileges > to modify directories in the library) > > > Dapple:~/Rtest stevenmckinney$ sudo R > Password: > > R version 2.6.2 (2008-02-08) > Copyright (C) 2008 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > > > I installed lme4 alright with the suggested command > from http://r-forge.r-project.org/R/?group_id=60 > > >> install.packages("lme4",repos="http://R-Forge.R-project.org") > trying URL > 'http://R-Forge.R-project.org/bin/macosx/universal/contrib/2.6/lme4_0.999375-13.tgz' > Content type 'application/x-gzip' length 353734 bytes (345 Kb) > opened URL > ================================================== > downloaded 345 Kb > > > The downloaded packages are in > /tmp/Rtmpakk1fU/downloaded_packages > > So lme4 installed alright. > > Matrix choked for some reason. > >> install.packages("Matrix",repos="http://R-Forge.R-project.org") > trying URL > 'http://R-Forge.R-project.org/bin/macosx/universal/contrib/2.6/Matrix_0.999375-10.tgz' > Content type 'application/x-gzip' length 1783421 bytes (1.7 Mb) > opened URL > ================================================== > downloaded 1.7 Mb > > Error: cannot remove prior installation of package 'Matrix' > > This is what I was trying to avoid by running the process via 'sudo', > not sure what went wrong. > > Installing from source worked: > >> install.packages("Matrix",repos="http://R-Forge.R-project.org", >> type = "source") > trying URL > 'http://R-Forge.R-project.org/src/contrib/Matrix_0.999375-10.tar.gz' > Content type 'application/x-gzip' length 1502286 bytes (1.4 Mb) > opened URL > ================================================== > downloaded 1.4 Mb > > * Installing *source* package 'Matrix' ... > ** libs > ** arch - ppc > gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx- > version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/ > R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/ > local/include -I./UFconfig -fPIC -g -O2 -c CHMfactor.c -o > CHMfactor.o > powerpc-apple-darwin8-gcc-4.2.1: unrecognized option '-no-cpp- > precomp' > . > . > . > xtabs text html latex example > ** building package indices ... > Loading required package: Matrix > Loading required package: stats > Loading required package: methods > Loading required package: lattice > > Attaching package: 'Matrix' > > > The following object(s) are masked from package:stats : > > xtabs > > * DONE (Matrix) > > The downloaded packages are in > /private/tmp/Rtmpakk1fU/downloaded_packages > Updating HTML index of packages in '.Library' >> require("lme4") > Loading required package: lme4 > Loading required package: Matrix > Loading required package: lattice > > Attaching package: 'Matrix' > > > The following object(s) are masked from package:stats : > > xtabs > >> > > > So this is one way to do it. > > Hope it works for you. > > > Best regards > > Steven McKinney > > Statistician > Molecular Oncology and Breast Cancer Program > British Columbia Cancer Research Centre > > email: smckinney +at+ bccrc +dot+ ca > > tel: 604-675-8000 x7561 > > BCCRC > Molecular Oncology > 675 West 10th Ave, Floor 4 > Vancouver B.C. > V5Z 1L3 > Canada > > > > > -----Original Message----- > From: [EMAIL PROTECTED] on behalf of Jarrett Byrnes > Sent: Thu 4/24/2008 4:16 PM > To: r-sig-mac@stat.math.ethz.ch > Subject: [R-SIG-Mac] Installing current version of lme4 and Matrix > on a mac > > Hey, all! I'm trying to use the current version of lme4 over at > http://R-Forge.R-project.org > but have been unable to do so thus far. I get errors stating that > it requires a i686 architecture or otherwise, and installing Matrix is > a mess. I have a G4 mac. > > Has anyone here been able to install it on a non-intel mac? If so, > could you post instructions as to how? Thanks! > > -Jarrett > > > > > ---------------------------------------- > Jarrett Byrnes > Population Biology Graduate Group, UC Davis > Bodega Marine Lab > 707-875-1969 > http://www-eve.ucdavis.edu/stachowicz/byrnes.shtml > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac