Ok, I will take this over to the R-SIG-Mac list and cc Herve who is
the build manager of Bioconductor. I suspect that something is wrong
with the Bioconductor builds.
Synopsis: Jason is running R-2.7.0 from CRAN on an Intel macbook
running 10.5.3. He says he has Xcode 3.0 installed. He tries to
install the binary version of aff from Bioconductor using the normal
biocLite("affy")
However, even though the tarball downloads and gets installed, the
package won't load. It complains that it needs the library /usr/local/
lib/libintl.3.dylib (and an otool -L really confirms this), but
apparently this files does not exists. I am a bit surprised that the
binary version links to something in /usr/local. I have this file on
my PPC G4 running 10.5.3. As I see it, this should work out of the box
with the system Jason is running. Does anyone have any good ideas? My
hunch is that something might be up with the binary builds?
Vince Carey reports that a student of his had a similar problem.
Kasper
On Jun 16, 2008, at 6:53 AM, jason smith wrote:
Thanks Steve,
Here is what I get from otool:
jason-smiths-macbook:~ sjorges2002$ otool -L /Users/sjorges2002/
Library/R/2.7/library/affy/libs/i386/affy.so
/Users/sjorges2002/Library/R/2.7/library/affy/libs/i386/affy.so:
affy.so (compatibility version 0.0.0, current version 0.0.0)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version
1.2.3)
/Library/Frameworks/R.framework/Versions/2.7/Resources/lib/
libR.dylib (compatibility version 2.7.0, current version 2.7.0)
/usr/local/lib/libintl.3.dylib (compatibility version 8.0.0, current
version 8.3.0)
/usr/lib/libiconv.2.dylib (compatibility version 5.0.0, current
version 5.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 88.3.10)
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/
CoreFoundation (compatibility version 150.0.0, current version
368.35.0)
/usr/local/lib/libgcc_s.1.dylib (compatibility version 1.0.0,
current version 1.0.0)
Best
Jason
--- On Mon, 6/16/08, Steve Lianoglou
<[EMAIL PROTECTED]> wrote:
You're not doing it right :-)
otool -L
/Users/sjorges2002/Library/R/2.7/library/affy/libs/i386/affy.so
Let's see what you get from that.
-steve
_______________________________________________
R-SIG-Mac mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
