Dear Simon, dear Stephen,
thanks a lot for taking your time and your advice.
Sys.setenv("MACOSX_DEPLOYMENT_TARGET"="10.4") works perfect.
Kind regards,
Christoph
On Oct 22, 2008, at 10:23 PM, Simon Urbanek wrote:
Christoph,
please make sure you have:
- Xcode 2.4 or higher installed (2.5 recommended)
- you are using Apple's compilers
- MACOSX_DEPLOYMENT_TARGET is not explicitly set (e.g. try
Sys.getenv("MACOSX_DEPLOYMENT_TARGET"))
If all the above is true, please send me the output in Terminal:
which gcc
gcc --version
then try
Sys.setenv("MACOSX_DEPLOYMENT_TARGET"="10.4")
before installing a package from source.
Thanks,
Simon
On Oct 22, 2008, at 5:33 , Christoph Heibl wrote:
Dear list,
after having installed R-2.8.0 on Mac OS 10.4.11, I get an error
message when I try to install the source of a package (please see
below). I was trying to find a solution on the web, but my
understanding of the architecture of Mac OS is to weak to make
something out of the hints I found. Can someone point me towards
an easy-understandable solution to the problem? What do I have to
change exactly and how can I do it?
Thank you in advance!
Christoph Heibl
# The problem ...
# trying to install 'gee'
> install.packages("gee", type = "source")
trying URL 'http://cran.miroir-francais.fr/src/contrib/
gee_4.13-13.tar.gz'
Content type 'application/x-gzip' length 50101 bytes (48 Kb)
opened URL
==================================================
downloaded 48 Kb
WARNING: ignoring environment value of R_HOME
* Installing *source* package 'gee' ...
** libs
** arch - i386
gfortran -arch i386 -fPIC -g -O2 -c dgedi.f -o dgedi.o
gfortran -arch i386 -fPIC -g -O2 -c dgefa.f -o dgefa.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
Resources/include -I/Library/Frameworks/R.framework/Resources/
include/i386 -I/usr/local/include -fPIC -g -O2 -c ugee.c -o
ugee.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-
headerpad_max_install_names -undefined dynamic_lookup -
single_module -multiply_defined suppress -L/usr/local/lib -o
gee.so dgedi.o dgefa.o ugee.o -L/Library/Frameworks/R.framework/
Resources/lib/i386 -lRblas -lgfortran -lgfortran -F/Library/
Frameworks/R.framework/.. -framework R -Wl,-framework -
Wl,CoreFoundation
** arch - ppc
gfortran -arch ppc -fPIC -g -O2 -c dgedi.f -o dgedi.o
gfortran -arch ppc -fPIC -g -O2 -c dgefa.f -o dgefa.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/
Resources/include -I/Library/Frameworks/R.framework/Resources/
include/ppc -I/usr/local/include -fPIC -g -O2 -c ugee.c -o
ugee.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-
headerpad_max_install_names -undefined dynamic_lookup -
single_module -multiply_defined suppress -L/usr/local/lib -o
gee.so dgedi.o dgefa.o ugee.o -L/Library/Frameworks/R.framework/
Resources/lib/ppc -lRblas -lgfortran -lSystemStubs -lgfortran -
lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -
Wl,-framework -Wl,CoreFoundation
ld: flag: -undefined dynamic_lookup can't be used with
MACOSX_DEPLOYMENT_TARGET environment variable set to: 10.1
/usr/libexec/gcc/powerpc-apple-darwin8/4.0.1/libtool: internal
link edit command failed
make: *** [gee.so] Error 1
chmod: /Library/Frameworks/R.framework/Versions/2.8/Resources/
library/gee/libs/ppc/*: No such file or directory
ERROR: compilation failed for package 'gee'
** Removing '/Library/Frameworks/R.framework/Versions/2.8/
Resources/library/gee'
The downloaded packages are in
/private/tmp/RtmpH8ykpZ/downloaded_packages
Updating HTML index of packages in '.Library'
Warning message:
In install.packages("gee", type = "source") :
installation of package 'gee' had non-zero exit status
________________________________________________________
Christoph Heibl
Systematic Botany
Ludwig-Maximilians-Universität München
Menzinger Str. 67
D-80638 München
GERMANY
phone: +49-(0)89-17861-251
e-mail: [EMAIL PROTECTED]
http://www.christophheibl.de/ch-home.html
SAVE PAPER - THINK BEFORE YOU PRINT
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