It was suggested to update my lme4 package to the lastest version at
CRAN. After installing it I get the following error:
> library(lme4)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_start' not provided by package 'Matrix'
Error: package/namespace load failed for 'lme4'
Searching on the internet it seems someone had the same error and
downgrade their Matrix from *-17 to *-16 except that I can't find a
binary for 2.8 for Matrix anywhere.
Thanks,
Chris
On Nov 19, 2008, at 2:28 PM, Simon Urbanek wrote:
On Nov 19, 2008, at 15:07 , Christopher David Desjardins wrote:
Thanks. What I am still a bit confused about is why it loads in
Aquamacs and from Terminal but not from R.app GUI. This still
seems like a bit of a mystery to me.
Because you have set different library paths in each.
Check .libPaths() as I was suggesting in the first e-mail.
Cheers
S
On Nov 19, 2008, at 8:34 AM, Simon Urbanek wrote:
On Nov 18, 2008, at 22:30 , Christopher David Desjardins wrote:
Am I correct in thinking then that's it this old version of lme4
that I have installed? This version is from 14 October 2007 but
I need this specific version for a course I'm taking.
Yes, it appears so. You cannot use such an old version (binary)
with the current R. For the course it should not matter which
version you are using.
If you feel brave, you can try to compile the old version from
sources in the new R (download the source .tar.gz file and use R
CMD INSTALL to install it). It may not work because old versions
are not designed to work in new R versions, but you can try your
luck if you really can't live with the new version.
Cheers,
S
On Nov 18, 2008, at 8:23 PM, Simon Urbanek wrote:
You are picking up a very ancient binary for R 2.5.0 (as you can
see from the error). Check your .libPath() for old package
binaries and remove/reinstall them.
Cheers,
S
On Nov 18, 2008, at 8:37 PM, Christopher David Desjardins wrote:
When I try to load lme4 on R (2.8.0) in the R GUI for Mac OS X,
I get the following warnings and errors ...
> library(lme4)
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from package:stats :
xtabs
The following object(s) are masked from package:base :
colMeans,
colSums,
rcond,
rowMeans,
rowSums
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/
Resources/library/lme4/libs/i386/lme4.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/lme4/
libs/i386/lme4.so, 6): Library not loaded: /Library/Frameworks/
R.framework/Versions/2.5/Resources/lib/libRlapack.dylib
Referenced from: /Library/Frameworks/R.framework/Resources/
library/lme4/libs/i386/lme4.so
Reason: image not found
In addition: Warning messages:
1: In namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: cov2cor
2: In namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: update
3: In namespaceImportFrom(self, asNamespace(ns)) :
replacing previous import: xtabs
Error: package/namespace load failed for 'lme4'
However, I can properly load lme4 from Aquamacs via ESS and
from Terminal. I get the same warnings just not the dyn.load()
error.
Does anyone know what I need to do?
Thanks,
Chris
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