From the crash report it looks like perhaps your history file has
been corrupted. I'd delete it and try again
On Jan 1, 2009, at 4:26 PM, William Revelle <[email protected]> wrote:
MacBook Pro running OS 10.5.6
Running R 2.8.1 patched (2008-12-31) (although same problem with
other installations).
Trying to run R.app Gui R 2.8.1 GUI 1.27 Tiger build 32-bit (5313)
but it crashes on loading every time.
Problem just started today, I have reinstalled R 2.8.1 several
times, tried multiple versions of the GUI. I continue to have it
give a malloc error when it starts.
I can run R 2.8.1 from the console in X11. But after using the
GUI, that is painful.
I have restarted multiple times, checked permissions, reinstalled R
(multiple times), tried different GUIs. Time Travelled back to
yesterday to get what was working fine, all to no avail.
Suggestions would be greatly appreciated.
Thanks.
Bill
Report from console log
1/1/09 6:10:31 PM R[1030] R(1030,0xa003c720) malloc: ***
mmap(size=712704) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
1/1/09 6:10:31 PM R[1030] R(1030,0xa003c720) malloc: ***
mmap(size=712704) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
1/1/09 6:10:33 PM ReportCrash[1032] Formulating crash report for
process R[1030]
1/1/09 6:10:34 PM ReportCrash[1032] Saved crashreport to /Volumes/WR/
bill/Library/Logs/CrashReporter/R_2009-01-01-181031_WR.crash using
uid: 503 gid: 503, euid: 503 egid: 503
1/1/09 6:10:34 PM ReportCrash[1032] Saved crashreport to /Volumes/WR/
bill/Library/Logs/CrashReporter/R_2009-01-01-181031_WR.crash using
uid: 503 gid: 503, euid: 503 egid: 503
1/1/09 6:10:34 PM com.apple.launchd[110] ([0x0-0x91091].org.R-
project.R[1030]) Exited abnormally: Bus error
1/1/09 6:10:34 PM com.apple.launchd[110] ([0x0-0x91091].org.R-
project.R[1030]) Exited abnormally: Bus error
1/1/09 6:18:05 PM ReportCrash[1037] Formulating crash report for
process mdworker[887]
1/1/09 6:18:06 PM com.apple.launchd[1] (0x10c760.mdworker[887])
Exited abnormally: Segmentation fault
1/1/09 6:18:06 PM ReportCrash[1037] Saved crashreport to /Library/
Logs/CrashReporter/mdworker_2009-01-01-181804_WR.crash using uid: 0
gid: 0, euid: 0 egid: 0
1/1/09 6:18:12 PM ReportCrash[1037] Formulating crash report for
process mdworker[1039]
1/1/09 6:18:12 PM ReportCrash[1037] Formulating crash report for
process mdworker[1039]
1/1/09 6:18:12 PM com.apple.launchd[1] (0x10c760.mdworker[1039])
Exited abnormally: Segmentation fault
1/1/09 6:18:12 PM ReportCrash[1037] Saved crashreport to /Library/
Logs/CrashReporter/mdworker_2009-01-01-181811_WR.crash using uid: 0
gid: 0, euid: 0 egid: 0
Error report (abbreviated, happy to send a longer one).
Process: R [1030]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 2.8.1 GUI 1.27 Tiger build 32-bit (5313)
Code Type: X86 (Native)
Parent Process: launchd [110]
Date/Time: 2009-01-01 18:10:31.940 -0600
OS Version: Mac OS X 10.5.6 (9G55)
Report Version: 6
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0
Thread 0 Crashed:
0 libSystem.B.dylib 0xffff132f __longcopy + 303
(cpu_capabilities.h:249)
1 libSystem.B.dylib 0xffff086e __memcpy + 206
(cpu_capabilities.h:246)
2 com.apple.CoreFoundation 0x951ed3fb
_CFStringCheckAndGetCharacters + 187
3 com.apple.Foundation 0x953b11a3 -[NSCFString
getCharacters:range:] + 67
4 com.apple.Foundation 0x953b6604
_NSNewStringByAppendingStrings + 1044
5 com.apple.Foundation 0x953b6150 -[NSString
stringByAppendingString:] + 192
6 org.R-project.R 0x000077e0 -[RController
doLoadHistory:] + 851 (RController.m:1514)
7 org.R-project.R 0x00003c99 -[RController
awakeFromNib] + 2245 (RController.m:503)
8 com.apple.CoreFoundation 0x9525d915 -[NSSet
makeObjectsPerformSelector:] + 181
9 com.apple.AppKit 0x93f6645a -[NSIBObjectData
nibInstantiateWithOwner:topLevelObjects:] + 1533
10 com.apple.AppKit 0x93f5c686 loadNib + 264
11 com.apple.AppKit 0x93f5bfe8 +
[NSBundle(NSNibLoading)
_loadNibFile:nameTable:withZone:ownerBundle:] + 946
12 com.apple.AppKit 0x93f5bc2b +
[NSBundle(NSNibLoading) loadNibFile:externalNameTable:withZone:] + 171
13 com.apple.AppKit 0x93f5bb69 +
[NSBundle(NSNibLoading) loadNibNamed:owner:] + 391
14 org.R-project.R 0x000028d0 main + 298 (main.m:
65)
15 org.R-project.R 0x0000278a _start + 216
16 org.R-project.R 0x000026b1 start + 41
Thread 1:
0 libSystem.B.dylib 0x900151c6 mach_msg_trap + 10
1 libSystem.B.dylib 0x9001c9bc mach_msg + 72
2 com.apple.CoreFoundation 0x951d50ae
CFRunLoopRunSpecific + 1790
3 com.apple.CoreFoundation 0x951d5cd8 CFRunLoopRunInMode
+ 88
4 com.apple.CFNetwork 0x9284d052
CFURLCacheWorkerThread(void*) + 396
5 libSystem.B.dylib 0x90046095 _pthread_start + 321
6 libSystem.B.dylib 0x90045f52 thread_start + 34
Thread 2:
0 libSystem.B.dylib 0x900151c6 mach_msg_trap + 10
1 libSystem.B.dylib 0x9001c9bc mach_msg + 72
2 com.apple.CoreFoundation 0x951d50ae
CFRunLoopRunSpecific + 1790
3 com.apple.CoreFoundation 0x951d5cd8 CFRunLoopRunInMode
+ 88
4 com.apple.Foundation 0x953ee64d -[NSConnection
sendInvocation:internal:] + 3005
5 com.apple.Foundation 0x953ed7c9 -[NSDistantObject
forwardInvocation:] + 329
6 com.apple.CoreFoundation 0x9525496a ___forwarding___ +
986
7 com.apple.CoreFoundation 0x952549d2
_CF_forwarding_prep_0 + 50
8 org.R-project.R 0x00004c57 -[RController
readThread:] + 250 (RController.m:652)
9 com.apple.Foundation 0x953b77ed -[NSThread main] + 45
10 com.apple.Foundation 0x953b7394 __NSThread__main__
+ 308
11 libSystem.B.dylib 0x90046095 _pthread_start + 321
12 libSystem.B.dylib 0x90045f52 thread_start + 34
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x00040000 ebx: 0x00000020 ecx: 0x0006dcd2 edx: 0xfffc0000
edi: 0x00040000 esi: 0xffd25000 ebp: 0xbfffec9c esp: 0xbfffec90
ss: 0x0000001f efl: 0x00010246 eip: 0xffff132f cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000000
--
William Revelle http://personality-project.org/revelle.html
Professor http://personality-project.org/personality.html
Department of Psychology http://www.wcas.northwestern.edu/psych/
Northwestern University http://www.northwestern.edu/
Attend ISSID/ARP:2009 http://issid.org/issid.2009/
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