On Mon, 2 Mar 2009, David Winsemius wrote:
I tried to install the current version of rgl on R-forge from source from the
64 bit R-GUI and get this error during installation :
<entire listing copied below>
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
** Removing '/Library/Frameworks/R.framework/Resources/library/rgl'
** Restoring previous '/Library/Frameworks/R.framework/Resources/library/rgl'
The downloaded packages are in
/private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/Rtmp3Z2KtQ/downloaded_packages
I do have an X11 installation, XQuartz 2.3.1 (xorg-server 1.4.2-apple17), and
I am using the Apple version of X from Xcode, and building rgl works
for me under an x86_64 build of R: it says
checking for X... libraries /usr/X11/lib, headers /usr/X11/include
checking for glEnd in -lGL... yes
checking for gluProject in -lGLU... yes
...
It's a while since I used XQuartz, but my recollection is that it
used those locations.
rgl's configure uses the standard AC_PATH_X, which supports
X features:
--x-includes=DIR X include files are in DIR
--x-libraries=DIR X library files are in DIR
so that is how you specify the paths if you need to.
I used the command line to do this, as source package builds
ultimately call command-line R as in
~/R/R64/bin/R CMD INSTALL rgl_0.83-751.tar.gz
wonder whether I need to do something to make X11's availability visible to
the Installer? I believe that it loads under the 32 bit GUI although the
version appears to be 0.82-2.
--
David Winsemius
sessionInfo()
R version 2.8.1 Patched (2009-01-07 r47515)
i386-apple-darwin9.6.0
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] mapproj_1.1-7.2 maps_2.0-40
loaded via a namespace (and not attached):
[1] grid_2.8.1 lattice_0.17-20 tools_2.8.1
Warning message:
In install.packages(c("rgl"), lib =
"/Library/Frameworks/R.framework/Resources/library/", :
installation of package 'rgl' had non-zero exit status
capabilities()
jpeg png tiff tcltk X11 aqua http/ftp sockets
libxml fifo cledit iconv
TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE
TRUE TRUE TRUE TRUE
NLS profmem cairo
TRUE FALSE TRUE
---- intall listing follows----
trying URL 'http://R-Forge.R-project.org/src/contrib/rgl_0.83-751.tar.gz'
Content type 'application/x-gzip' length 1656674 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb
* Installing *source* package 'rgl' ...
checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none
needed
checking how to run the C preprocessor... gcc-4.2 -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89...
(cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
** Removing '/Library/Frameworks/R.framework/Resources/library/rgl'
** Restoring previous '/Library/Frameworks/R.framework/Resources/library/rgl'
The downloaded packages are in
/private/var/folders/xS/xSUsVXTIHEiP7OLJg2OXmU+++TI/-Tmp-/Rtmp3Z2KtQ/downloaded_packages
----end listing----
On Mar 2, 2009, at 4:39 PM, Duncan Murdoch wrote:
On 3/2/2009 2:48 PM, chaogai wrote:
Oops, sorry
R version 2.8.1 (2008-12-22)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] tcltk stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] rgl_0.81 svGUI_0.9-44 svSocket_0.9-43 svMisc_0.9-46
0.81 isn't the current version of rgl on CRAN. Please try that one, or
even better, the development version on R-forge.
Duncan Murdoch
Duncan Murdoch wrote:
On 3/2/2009 2:00 PM, chaogai wrote:
Whatever it is, it is also happening on my Acer, Suse 11.1, 32 bits,
self build R.
Versions of R and rgl?
Duncan Murdoch
Kees
Bo Zhou wrote:
Thanks Duncan.
I haven't got a chance to try it in windows yet. But I won't be
surprised if it's my driver's fault. I had OpenGL problems on this
dell laptop before.....
Date: Sun, 1 Mar 2009 18:29:20 -0500
From: [email protected]
To: [email protected]
CC: [email protected]; [email protected]
Subject: Re: [R] rgl persp3d bounding box color problem.
On 01/03/2009 5:54 PM, Bo Zhou wrote:
site down......
here is the code
library(rgl)
plot1:
persp3d(x=1:11,y=1:210,z=matrix(rep(1,11*210),11,210),col=matrix(rep("#FF0000",11*210),11,210))
plot2:
persp3d(x=1:11,y=1:10,z=matrix(rep(1,11*10),11,10),col=matrix(rep("#FF0000",11*10),11,10))
Works fine on Mac OS 10.5 too. Looks like a bug in your OpenGL
driver...
Duncan Murdoch
Thanks!
Bo
Date: Mon, 2 Mar 2009 09:28:31 +1100
Subject: Re: [R] rgl persp3d bounding box color problem.
From: [email protected]
To: [email protected]
I would not mind trying, but the link no longer works...
Remko
-------------------------------------------------
Remko Duursma
Post-Doctoral Fellow
Centre for Plant and Food Science
University of Western Sydney
Hawkesbury Campus
Richmond NSW 2753
Dept of Biological Science
Macquarie University
North Ryde NSW 2109
Australia
Mobile: +61 (0)422 096908
On Mon, Mar 2, 2009 at 8:16 AM, Bo Zhou <[email protected]>
wrote:
Thanks, Duncan.
What's your platform? Could this be an issues related to my
platform? I'm on Ubuntu 8.10 64bit using cran's R package. I
built rgl package on my machine using install.packages(). I'm
going to give it a try in windows.
I would be very grateful if anyone using similar setup could
give it a try.
Thanks,
Bo
Date: Sun, 1 Mar 2009 07:03:10 -0500
From: [email protected]
To: [email protected]
CC: [email protected]
Subject: Re: [R] rgl persp3d bounding box color problem.
On 28/02/2009 4:20 PM, Bo Zhou wrote:
Hi guys,
I hit on a problem when I use rgl.
Could you try to run the code here in this link and see why
the first persp3d gives a red bounding box and the second
shows black?
They both show as black on my system.
Duncan Murdoch
http://rafb.net/p/g1i7ur33.html
(sorry for not pasting the code here directly but my previous
email got filtered by this list so I suspect my code looks
like spam to the spam filter)
I'm expecting black color to be the right result but the code
is virtually same except different data size. Looks like a mem
bug to me?
BTW you will need to install the rgl package
Thanks,
Bo
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PLEASE do read the posting guide
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and provide commented, minimal, self-contained, reproducible code.
______________________________________________
[email protected] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
______________________________________________
[email protected] mailing list
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PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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