Simon and Kasper,
I have gotten around the problem of the broken entry points by
directly installing source files by
source("http://bioconductor.org/biocLite.R";)
biocLite("graph")
and
biocLite("Rgraphviz").
Now, everything works like a charm (again).
As I am sure you know, there is still a problem with installing from
the Packages and Data menu:
Error: could not find function "package.manager"
Error: could not find function "browse.pkgs"
I am using R.app
R.app GUI 1.27 (5372 Tiger build 32-bit), S.Urbanek & S.M.Iacus,
R version 2.9.0 alpha (2009-03-23 r48200)
i386-apple-darwin8.11.1
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] GPArotation_2008.05-1 Rgraphviz_1.21.9 graph_1.21.4
[4] MASS_7.2-46 psych_1.0-67
loaded via a namespace (and not attached):
[1] cluster_1.11.12 tools_2.9.0
Best wishes,
Bill
At 5:56 PM -0400 3/23/09, Simon Urbanek wrote:
On Mar 23, 2009, at 17:33 , William Revelle wrote:
Simon and Kasper,
Simon wrote that
I installed it by hand. Copying it over from the R2.8.1 library
into the 2.9.0 (alpha) library.
That won't work. The paths to libR are entirely different - you
have to re-compile between R 2.8.x and R 2.9.x.
That is fine. However, I have the other problem (not related to
the Rgraphviz problem) that I can not download packages because of
the installer and package manager error.
rror: could not find function "data.manager"
Error: could not find function "browse.pkgs"
Error: could not find function "browse.pkgs"
Error: could not find function "package.manager"
Me culpa - those entry points have been removed, so the GUI needs
updating. Will fix and keep you posted. Thanks for reporting,
Simon
...
--
William Revelle http://personality-project.org/revelle.html
Professor http://personality-project.org/personality.html
Department of Psychology http://www.wcas.northwestern.edu/psych/
Northwestern University http://www.northwestern.edu/
Attend ISSID/ARP:2009 http://issid.org/issid.2009/
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