David,
On Apr 10, 2009, at 5:55 PM, David Winsemius wrote:
I downloaded the Leopard 64 bit pkg: R-2.9-beta-48309.pkg
It installed without apparent error. I want to retain version 2.8.1
so I checked to make sure the receipt had been deleted.
The receipts are now superseded in Leopard by an internal database
which is controlled by pkgutil, so you have to use pkgutil --forget
instead.
Also installed the 64 bit GUI: R-GUI-5391-2.1-leopard-Leopard64.dmg
with produced an icon named R.app
That is the GUI for 2.10.0 (R-devel) so it wont work with your freshly
installed 2.9.0. You should use the installed GUI in Applications that
came with the R 2.9.0 beta.
Renamed it R_2_9 and dragged to the Applications folder. Opening it
caused an immediate crash with this error report:
Process: R [1604]
Path: /Applications/R64_2_9.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: launchd [107]
Date/Time: 2009-04-10 17:44:04.910 -0400
OS Version: Mac OS X 10.5.6 (9G55)
Report Version: 6
Exception Type: EXC_BREAKPOINT (SIGTRAP)
Exception Codes: 0x0000000000000002, 0x0000000000000000
Crashed Thread: 0
Dyld Error Message:
Library not loaded: /Library/Frameworks/R.framework/Versions/2.10/
Resources/lib/libR.dylib
Referenced from: /Applications/R64_2_9.app/Contents/MacOS/R
Reason: image not found
R will run as a 64 bit process from a Terminal command line.
Now when I attempt to run 2.8.1 with the old 64 bit GUI app I get an
error:
Process: R [1634]
Path: /Applications/R64_2.8.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: ??? (???)
Code Type: X86-64 (Native)
Parent Process: launchd [107]
Date/Time: 2009-04-10 17:51:44.748 -0400
OS Version: Mac OS X 10.5.6 (9G55)
Report Version: 6
Exception Type: EXC_BREAKPOINT (SIGTRAP)
Exception Codes: 0x0000000000000002, 0x0000000000000000
Crashed Thread: 0
Dyld Error Message:
Library not loaded: /Library/Frameworks/R.framework/Versions/2.8/
Resources/lib/libR.dylib
Referenced from: /Applications/R64_2.8.app/Contents/MacOS/R
Reason: image not found
I suspect this means that your R 2.8.x was upgraded to R 2.9.x so the
R library is no longer present.
BTW the Matrix that was installed in the library was 0.999375-23-290
Yes, that was the version before RC. The RC now has -24.
My current plan is to delete r 2.9.0(beta) and attempt to get 2.8.1
running again.
Well, I would recommend you to install the beta first and try it
(without replacing things etc.). You can always re-install R 2.8.1
(the mini will do) to get back to your previous state (upgrades don't
remove additionally installed packages).
Thanks,
Simon
--
David Winsemius
On Apr 10, 2009, at 9:22 AM, Simon Urbanek wrote:
Gad,
On Apr 10, 2009, at 5:38 , Gad Abraham wrote:
Simon Urbanek wrote:
I would like to remind everyone that we are in the final week of
the beta testing of R 2.9.0, so please test the binaries now!
There are installers for both the Tiger (32-bit) and Leopard (32-
bit and 64-bit) binaries at
http://R.research.att.com/
Reporting bugs right *after* the release is pointless - that's
why we are providing beta and rc builds, so please test them well
before 4/17! Post any issues you have with it here.
The 2.9 build seems to be broken as of 02:19 April 10.
There is some thing wrong on CRAN with Matrix recommended package
for R 2.9.0 rc:
hagal:R-2.9-branch$ tools/rsync-recommended
receiving file list ... done
KernSmooth_2.22-22.tar.gz
Matrix_0.999375-23-290.tar.gz
Matrix_0.999375-24.tar.gz
VR_7.2-46.tar.gz
boot_1.2-36.tar.gz
cluster_1.11.13.tar.gz
codetools_0.2-2.tar.gz
foreign_0.8-34.tar.gz
lattice_0.17-22.tar.gz
mgcv_1.5-2.tar.gz
nlme_3.1-90.tar.gz
rpart_3.1-43.tar.gz
survival_2.35-4.tar.gz
sent 429 bytes received 7097983 bytes 457962.06 bytes/sec
total size is 7094360 speedup is 1.00
Creating links
ln: Matrix.tgz: No such file or directory
Note that Matrix is listed twice and the links is not created,
that's why configuration of R fails with
configure: error: Some of the recommended packages are missing Use
--without-recommended-packages if this was intentional
I'll assume that -24 is correct, create it manually and re-start
the build. Kurt/Stefan, can you please have a look and fix it on
CRAN for the next nightly build?
Thanks,
Simon
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David Winsemius, MD
Heritage Laboratories
West Hartford, CT
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