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Today's Topics:
1. tcltk and R 2.9.1 (Linda Rutledge)
2. Re: tcltk and R 2.9.1 (Simon Urbanek)
3. RSwitch (cstrato)
4. Re: RSwitch (Steve Lianoglou)
5. Komodo, SciViews-K, and 64 bit R (Jonathan Greenberg)
6. Re: Komodo, SciViews-K, and 64 bit R (Philippe Grosjean)
----------------------------------------------------------------------
Message: 1
Date: Wed, 1 Jul 2009 10:52:25 -0400
From: "Linda Rutledge" <[email protected]>
Subject: [R-SIG-Mac] tcltk and R 2.9.1
To: <[email protected]>
Message-ID: <[email protected]>
Content-Type: text/plain; charset="iso-8859-1"
Hi,
When I try to load the Geneland GUI in R 2.9.1 for Mac OS 10.4.11
(with X11 installed from the installation disk) it always comes up
with the error
"Loading Tcl/Tk interface ... Error in dyn.load(file, DLLpath =
DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.9/Resources/library/tcltk/libs/i386/tcltk.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.9/Resources/
library/tcltk/libs/i386/tcltk.so, 10): Library not loaded: /usr/
X11R6/lib/libX11.6.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/2.9/
Resources/library/tcltk/libs/i386/tcltk.so
Reason: no suitable image found. Did find:
/usr/X11R6/lib/libX11.6.dylib: mach-o, but wrong architecture
Error : .onLoad failed in 'loadNamespace' for 'tcltk'
Error: package 'tcltk' could not be loaded"
I do not have this problem with my laptop that is running R 2.9.0.
Is there some bug in the R2.9.1 version that prevents tcltk from
loading? Is there a way to fix this?
Thanks
------------------------------
Message: 2
Date: Wed, 1 Jul 2009 13:01:12 -0400
From: Simon Urbanek <[email protected]>
Subject: Re: [R-SIG-Mac] tcltk and R 2.9.1
To: Linda Rutledge <[email protected]>
Cc: [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
On Jul 1, 2009, at 10:52 AM, Linda Rutledge wrote:
Hi,
When I try to load the Geneland GUI in R 2.9.1 for Mac OS 10.4.11
(with X11 installed from the installation disk) it always comes up
with the error
"Loading Tcl/Tk interface ... Error in dyn.load(file, DLLpath =
DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.9/Resources/library/tcltk/libs/i386/tcltk.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.9/Resources/
library/tcltk/libs/i386/tcltk.so, 10): Library not loaded: /usr/
X11R6/lib/libX11.6.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/2.9/
Resources/library/tcltk/libs/i386/tcltk.so
Reason: no suitable image found. Did find:
/usr/X11R6/lib/libX11.6.dylib: mach-o, but wrong architecture
Error : .onLoad failed in 'loadNamespace' for 'tcltk'
Error: package 'tcltk' could not be loaded"
I do not have this problem with my laptop that is running R 2.9.0.
Is there some bug in the R2.9.1 version that prevents tcltk from
loading? Is there a way to fix this?
Yes, re-install X11. You failed to supply any details so we can only
speculate, but my guess would be that you upgraded from ppc to intel
at some point (or installed some other X11) and thus your X11 doesn't
have intel binaries. But, again, without any details (sessionInfo(),
machine type and preferably output of "file /usr/X11R6/lib/
libX11.6.dylib") it's only a wild guess.
Cheers,
Simon
------------------------------
Message: 3
Date: Wed, 01 Jul 2009 23:26:41 +0200
From: cstrato <[email protected]>
Subject: [R-SIG-Mac] RSwitch
To: [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Dear Simon,
On my Mac (10.4.11) I have installed different versions of R and thus
like RSwitch very much. However, in my case it works only when I am
logged in as administrator.
Since I am usually logged in as normal user I have to:
logout -> login as admin -> run RSwitch -> logout -> login as user
I know this tool is unsupported but do you think there is a
possibility
for an update?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
------------------------------
Message: 4
Date: Wed, 1 Jul 2009 17:33:18 -0400
From: Steve Lianoglou <[email protected]>
Subject: Re: [R-SIG-Mac] RSwitch
To: cstrato <[email protected]>
Cc: [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
Hi,
On Jul 1, 2009, at 5:26 PM, cstrato wrote:
Dear Simon,
On my Mac (10.4.11) I have installed different versions of R and
thus like RSwitch very much. However, in my case it works only when
I am logged in as administrator.
Since I am usually logged in as normal user I have to:
logout -> login as admin -> run RSwitch -> logout -> login as user
I know this tool is unsupported but do you think there is a
possibility for an update?
You can *probably* get this behavior by changing the permissions on
your R.framework directory. By default, I think it's set to:
drwxrwxr-x 9 root admin 306 Jun 29 10:39 /Library/Frameworks/
R.framework/
Since the RSwitch program monkeys around with which symlinks point to
what in that folder, you'll need admin rights to use it.
I'm guessing that if you chown or chgrp that directory such that your
logged in user has the rights to change stuff in there, you can then
use the app as a non admin .. w/o an app update :-)
HTH,
-steve
--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
------------------------------
Message: 5
Date: Wed, 01 Jul 2009 14:35:01 -0700
From: Jonathan Greenberg <[email protected]>
Subject: [R-SIG-Mac] Komodo, SciViews-K, and 64 bit R
To: [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
MacRers:
I've been having a bit of trouble getting SciViews working cleanly
with R64 (from the AT&T website) -- first off, what is the proper
"sudo
ln -s" statement to get it working with MacOS X? Secondly, is there
any
way to get Komodo/Sciviews-K to work with "R64.app" besides simply
renaming that to R.app?
Thanks!
--j
--
Jonathan A. Greenberg, PhD
Postdoctoral Scholar
Center for Spatial Technologies and Remote Sensing (CSTARS)
University of California, Davis
One Shields Avenue
The Barn, Room 250N
Davis, CA 95616
Cell: 415-794-5043
AIM: jgrn307, MSN: [email protected], Gchat: jgrn307
------------------------------
Message: 6
Date: Thu, 02 Jul 2009 07:10:25 +0200
From: Philippe Grosjean <[email protected]>
Subject: Re: [R-SIG-Mac] Komodo, SciViews-K, and 64 bit R
To: Jonathan Greenberg <[email protected]>
Cc: "[email protected] Mac List"
<[email protected]>
Message-ID: <[email protected]>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Hello,
The "ln -s" command you talk about is to make a symbolic link to
Komodo
Edit (its installer fails to do that, despite there are a couple of
useful command line options provided). Open a terminal window on your
Mac and type this, providing you installed Komodo Edit.app in
/Applications (all on one line):
sudo ln -s /Applications/Komodo\ Edit.app/Contents/MacOS/komodo
/usr/bin/komodo
You will be prompted for administrative password. R can now open
documents directly inside Komodo.
For your second question, indeed, we should support 64-bit R too, and
including R64.app and R --arch x86_64/R --arch ppc64. For the moment,
you can do the changes by yourself like this:
- Open the toolbox in Komodo: View -> Tabs -> Toolbox
- Navigate to SciViews-K/GUI/Menus/R/Start R folder in the toolbox.
- Copy R app (Mac) entry (right-click -> copy in context menu)
- Select 'Start R' folder again and right-click -> paste)
- Select the pasted 'R app (Mac)' entry and right-click -> properties
- In the Properties dialog box, rename it to 'R64 app (Mac)', and in
Command: change it to 'open -a /Application/R64.app ....'
Restart Komodo Edit. You should be able to connect to your R 64-bit
application.
P.S.: untested, please report back your results
P.S.2: you should better use the SciViews-Help mailing list
(http://r-forge.r-project.org/mail/?group_id=194) and/or the feature
request in the SciViews Tracker
(http://r-forge.r-project.org/tracker/?group_id=194).
..............................................<?}))><........
) ) ) ) )
( ( ( ( ( Prof. Philippe Grosjean
) ) ) ) )
( ( ( ( ( Numerical Ecology of Aquatic Systems
) ) ) ) ) Mons-Hainaut University, Belgium
( ( ( ( (
..............................................................
Jonathan Greenberg wrote:
MacRers:
I've been having a bit of trouble getting SciViews working cleanly
with R64 (from the AT&T website) -- first off, what is the proper
"sudo
ln -s" statement to get it working with MacOS X? Secondly, is
there any
way to get Komodo/Sciviews-K to work with "R64.app" besides simply
renaming that to R.app?
Thanks!
--j
------------------------------
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