Hi,
On Jul 2, 2009, at 2:43 PM, stephen sefick wrote:
Where is the config.log?
Isn't it in the directory you're trying to compile from?
But also, here's another idea: I notice /sw/* and /opt/* in your
include library paths, so I wonder if maybe there is an other gcc
getting in your way which can't compile to different architecture
targets, ie: the "-arch i386" stuff you see in the "checking for gcc"
line here.
If you type "which gcc", which one pops up? Is it the one in /usr/bin,
or is there another installed via MacPorts of fink?
Just curious,
-steve
On Thu, Jul 2, 2009 at 11:33 AM, Jan de Leeuw<dele...@stat.ucla.edu>
wrote:
As the error message says: see config.log more more details,
search for "cannot create". It's usually a linking problem,
or a problem with include files, not a compiler problem per se.
On Jul 2, 2009, at 08:47 , stephen sefick wrote:
sudo R CMD install --configure-args='--with-proj-include=/sw/bin/
proj'
rgdal_0.6-9.tar.gz
* Installing to library
‘/Library/Frameworks/R.framework/Resources/library’
* Installing *source* package ‘rgdal’ ...
gdal-config: gdal-config
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... configure:
error:
C compiler cannot create executables
See `config.log' for more details.
ERROR: configuration failed for package ‘rgdal’
* Removing ‘/Library/Frameworks/R.framework/Resources/library/rgdal’
there is a C compiler problem? I have XCode 3.1.2.
Stephen Sefick
On Thu, Jul 2, 2009 at 10:05 AM, stephen sefick<ssef...@gmail.com>
wrote:
platform i386-apple-darwin8.11.1
arch i386
os darwin8.11.1
system i386, darwin8.11.1
status
major 2
minor 9.1
year 2009
month 06
day 26
svn rev 48839
language R
version.string R version 2.9.1 (2009-06-26)
gdal-config, proj, and ogr are in my path. I type them at the
shell
prompt and they work. They were installed using fink so they are
in
the /sw/bin directory. The installation did not work without
configuration flags and gave me the same error message that is at
the
end of the transcript, so I decided to tell R CMD install where
proj
was. Below is the transcript of my session:
sudo R CMD install --configure-args='--with-proj=/sw/bin/proj'
rgdal_0.6-9.tar.gz
Password:
* Installing to library
‘/Library/Frameworks/R.framework/Resources/library’
* Installing *source* package ‘rgdal’ ...
gdal-config: gdal-config
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C...
none
needed
checking how to run the C preprocessor... gcc -arch i386 -
std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a
directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj_api.h usability... no
checking proj_api.h presence... no
checking for proj_api.h... no
Error: proj_api.h not found.
If the PROJ.4 library is installed in a non-standard location,
use --configure-args='--with-proj-include=/opt/local/include'
for example, replacing /opt/local/* with appropriate values
for your installation. If PROJ.4 is not installed, install it.
ERROR: configuration failed for package ‘rgdal’
* Removing ‘/Library/Frameworks/R.framework/Resources/library/
rgdal’
any help would be greatly appreciated.
--
Stephen Sefick
Let's not spend our time and resources thinking about things that
are
so little or so large that all they really do for us is puff us up
and
make us feel like gods. We are mammals, and have not exhausted the
annoying little problems of being mammals.
-K.
Mullis
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===
Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of
Statistics;
Director: UCLA Center for Environmental Statistics (CES);
Editor: Journal of Multivariate Analysis, Journal of Statistical
Software;
US mail: 8125 Math Sciences Bldg, Box 951554, Los Angeles, CA
90095-1554
phone (310)-825-9550; fax (310)-206-5658; email: dele...@stat.ucla.edu
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-------------------------------------------------------------------------------------------------
No matter where you go, there you are. --- Buckaroo Banzai
http://gifi.stat.ucla.edu/sounds/nomatter.au
-------------------------------------------------------------------------------------------------
--
Stephen Sefick
Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods. We are mammals, and have not exhausted the
annoying little problems of being mammals.
-K. Mullis
_______________________________________________
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R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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