I see - you have a rogue directory
/Library/Frameworks/R.framework/Resources
in all normal installations that is a symlink but apparently you may
have used hard copy or something such that it's not a symlink.
If you remove that all should be well. What you have there is
definitely not a clean system ;). I have put a guard about such
strange framework setup in the R-devel, just in case.
Cheers,
Simon
On Dec 1, 2009, at 12:13 , Kasper Daniel Hansen wrote:
On Dec 1, 2009, at 11:29 AM, Simon Urbanek wrote:
ls -l /Library/Frameworks/R.framework
ls -l /Library/Frameworks/R.framework/Versions
ls -l /Library/Frameworks/R.framework/Versions/2.11
ls -l /Library/Frameworks/R.framework/Versions/2.11/Resources
This is my current state, after a failed sudo make install on R-2.10
and R-devel
grue-1:~/> ls -l /Library/Frameworks/R.framework
total 32
lrwxr-xr-x 1 root admin 24B Dec 1 09:41 Headers -> Versions/
Current/Headers
lrwxr-xr-x 1 root admin 30B Dec 1 09:41 Libraries -> Versions/
Current/Resources/lib
lrwxr-xr-x 1 root admin 31B Dec 1 09:41 PrivateHeaders ->
Versions/Current/PrivateHeaders
lrwxr-xr-x 1 root admin 18B Dec 1 09:41 R -> Versions/Current/R
drwxrwxr-x 4 root admin 136B Dec 1 09:41 Resources
drwxr-xr-x 5 root admin 170B Dec 1 09:41 Versions
grue-1:~/> ls -l /Library/Frameworks/R.framework/Versions
total 8
drwxr-xr-x 6 root admin 204B Nov 30 19:09 2.10
drwxr-xr-x 6 root admin 204B Dec 1 09:41 2.11
lrwxr-xr-x 1 root admin 4B Dec 1 09:41 Current -> 2.11
grue-1:~/> ls -l /Library/Frameworks/R.framework/Versions/2.11
total 16
lrwxr-xr-x 1 root admin 17B Dec 1 09:41 Headers -> Resources/
include
drwxr-xr-x 2 root admin 68B Dec 1 09:27 PrivateHeaders
lrwxr-xr-x 1 root admin 24B Dec 1 09:41 R -> Resources/lib/
libR.dylib
drwxr-xr-x 16 root admin 544B Dec 1 09:41 Resources
grue-1:~/> ls -l /Library/Frameworks/R.framework/Versions/2.11/
Resources
total 928
-rw-r--r-- 1 root admin 18K Dec 1 09:41 COPYING
-rw-r--r-- 1 root admin 408K Dec 1 09:41 NEWS
-rwxr-xr-x 1 root admin 8.1K Dec 1 09:41 R
-rwxr-xr-x 1 root admin 14K Dec 1 09:41 Rscript
-rw-r--r-- 1 root admin 46B Dec 1 09:41 SVN-REVISION
drwxr-xr-x 28 root admin 952B Dec 1 09:41 bin
drwxr-xr-x 15 root admin 510B Dec 1 09:41 doc
drwxr-xr-x 4 root admin 136B Dec 1 09:41 etc
drwxr-xr-x 10 root admin 340B Dec 1 09:41 include
drwxr-xr-x 3 root admin 102B Dec 1 09:26 lib
drwxr-xr-x 30 root admin 1.0K Dec 1 09:27 library
drwxr-xr-x 4 root admin 136B Dec 1 09:41 man1
drwxr-xr-x 3 root admin 102B Dec 1 09:26 modules
drwxr-xr-x 11 root admin 374B Dec 1 09:27 share
grue-1:~/>
Just for reference, my full build script is
#!/bin/bash
R_VERSION=devel
SRCDIR=R-${R_VERSION}-src
BUILDDIR=R-${R_VERSION}-build
if [ ! -d ${SRCDIR} ]; then
svn co https://svn.r-project.org/R/trunk ${SRCDIR}
fi
cd ${SRCDIR}
svn up || exit 1
tools/rsync-recommended || exit 1
tools/link-recommended || exit 1
cd ..
rm -rf ${BUILDDIR}
mkdir ${BUILDDIR}
cd ${BUILDDIR}
LANG=C
export LANG
../${SRCDIR}/configure SHELL='/bin/bash' \
r_arch=x86_64 \
CC="/usr/bin/gcc-4.2 -arch x86_64 -std=gnu99" \
CFLAGS="-g -O2 -std=gnu99 -march=nocona" \
CXX="/usr/bin/g++-4.2 -arch x86_64" \
CXXFLAGS="-g -O2 -march=nocona" \
OBJC="/usr/bin/gcc-4.2 -arch x86_64" \
F77="/usr/bin/gfortran-4.2 -arch x86_64" \
FFLAGS="-g -O2 -march=nocona" \
FC="/usr/bin/gfortran-4.2 -arch x86_64" \
FCFLAGS="-g -O2 -march=nocona" \
--x-includes=/usr/X11/include --x-libraries=/usr/X11/lib \
--with-system-zlib \
--with-blas='-framework vecLib' --with-lapack
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