r-sig-phylo  

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• [R-sig-phylo] An Introduction to Spatial Eco-Phylogenetics and Comparative Methods (SECM01) Oliver Hooker
• [R-sig-phylo] Comparing rates from fitContinuous in geiger Jeremiah Scott
• [R-sig-phylo] HPD in threshBayes function (phytools) Leonardo Matheus Servino
  • Re: [R-sig-phylo] HPD in threshBayes function (phytools) Liam J. Revell
  • Re: [R-sig-phylo] HPD in threshBayes function (phytools) Leonardo Matheus Servino
• [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Emmanuel Paradis
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot William Gearty
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot William Gearty
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Liam J. Revell
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
• [R-sig-phylo] Postdoc in phylogenetic comparative methods at UMiami Liam J. Revell
• [R-sig-phylo] The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Oliver Hooker
• [R-sig-phylo] Assistant Professor position in phylogenetics at CSU Sloan,Dan
• [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Felipe Rossetto
  • Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Liam J. Revell
  • Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Felipe Rossetto
• [R-sig-phylo] Warning NaNs produced in hisse Leonardo Matheus Servino
• [R-sig-phylo] print circles in the tree nodes coloring by PP Pedro Taucce
  • Re: [R-sig-phylo] print circles in the tree nodes coloring by PP Liam J. Revell
  • Re: [R-sig-phylo] print circles in the tree nodes coloring by PP Pedro Taucce
• [R-sig-phylo] ONLINE COURSE – Machine Learning with R (Intermediate – Advanced) (MLIA01) Oliver Hooker
• [R-sig-phylo] Warnings after running brm Leonardo Matheus Servino
• [R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation Laura Schaedler
  • Re: [R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation Liam J. Revell
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 186, Issue 3 Oscar Johnson
• [R-sig-phylo] Correlation coefficient from a PGLS Lior Glick
  • Re: [R-sig-phylo] Correlation coefficient from a PGLS Emmanuel Paradis
• [R-sig-phylo] Ordination of discrete traits in threshBayes Stênio Ítalo Araújo Foerster
• [R-sig-phylo] kdetrees Vojtěch Zeisek
• [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Felipe Rossetto
  • Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Liam J. Revell
  • Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Felipe Rossetto
• [R-sig-phylo] Title: Error in make.simmap() function: argument of length 0 Souza Ferreira, Rachel
• [R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC Diogo B. Provete
  • Re: [R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC Julien Clavel
• [R-sig-phylo] Error in phytools rateshift Lior Glick
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Lior Glick
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Lior Glick
• [R-sig-phylo] Using results of make.simmap to color edges by most likely state Rafael S Marcondes
  • Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state Liam J. Revell
  • Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state Rafael S Marcondes
• [R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023 Joe Felsenstein
• [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Emmanuel Paradis
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Klaus Schliep
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Emmanuel Paradis
  • [R-sig-phylo] Parallelization in ape::dist.topo Martin R. Smith
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
• [R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes Sishuo Wang
  • Re: [R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes Liam J. Revell
• [R-sig-phylo] Call for papers: Special Issue featuring linking micro- and macroevolution in Journal of Evolutionary Biology Masahito Tsuboi
• [R-sig-phylo] NAMESPACE issue Kevin Arbuckle
  • Re: [R-sig-phylo] NAMESPACE issue Emmanuel Paradis
  • Re: [R-sig-phylo] NAMESPACE issue Kevin Arbuckle
  • Re: [R-sig-phylo] NAMESPACE issue Liam J. Revell
• [R-sig-phylo] PhD projects: 1. wildlife trade 2. Placenta evolution Isabella Capellini
• [R-sig-phylo] Generating a matrix of interspecfic genetic distances Jarrett Phillips
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Viechtbauer, Wolfgang (NP)
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Viechtbauer, Wolfgang (NP)
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Jarrett Phillips
• [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH02) Oliver Hooker
  • Re: [R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023 Joe Felsenstein
• [R-sig-phylo] Introduction to Multi’omics Data Analysis from Microbial Communities (MOMC01) Oliver Hooker
• [R-sig-phylo] Postdoc position on PCM of trait evolution in Stockholm/Sweden Masahito Tsuboi
• [R-sig-phylo] Extract and summarise internal branch lengths for different samples Jhonny Capichoni Massante
  • Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples Liam J. Revell
  • Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples Liam J. Revell
• [R-sig-phylo] phytools GitHub version Liam J. Revell
• [R-sig-phylo] Extracting interspecific distances as a matrix Jarrett Phillips
  • Re: [R-sig-phylo] Extracting interspecific distances as a matrix Eliot Miller
  • [R-sig-phylo] Fwd: Extracting interspecific distances as a matrix Eliot Miller
• [R-sig-phylo] R phylogenetics workshop at UMass-Boston Liam J. Revell
• [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
• [R-sig-phylo] Counting and getting the age of cherries in a tree Ivan Magalhaes
  • Re: [R-sig-phylo] Counting and getting the age of cherries in a tree Liam J. Revell
  • Re: [R-sig-phylo] Counting and getting the age of cherries in a tree Ivan Magalhaes
• [R-sig-phylo] fitContinuous in Geiger William Brown
  • Re: [R-sig-phylo] fitContinuous in Geiger Liam J. Revell
• [R-sig-phylo] Phylogenetic bubble plot Saleh Rahimlou
  • Re: [R-sig-phylo] Phylogenetic bubble plot Liam J. Revell
• [R-sig-phylo] Estimating tip rates of molecular evolution Karla Shikev
  • Re: [R-sig-phylo] Estimating tip rates of molecular evolution Jacob Berv
• Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait Jonas Eberle
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait Klaus Schliep
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 178, Issue 5 Krzysztof Kozak
• Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait (Krzysztof Bartoszek) Krzysztof Bartoszek
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 178, Issue 3 Krzysztof Kozak
• [R-sig-phylo] ancestral state reconstruction with a complex discrete trait Krzysztof Kozak
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait Liam J. Revell
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait Jonas Eberle
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait roee maor
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait O'Meara, Brian C
• [R-sig-phylo] max tree depth in ace and fitMk Martin Ramirez
• [R-sig-phylo] Bayesian Phylogenetic Analysis Bruno Morais de Carvalho
• [R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object Jarrett Phillips
  • Re: [R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object Emmanuel Paradis
  • Re: [R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object Emmanuel Paradis
• [R-sig-phylo] reply to alternative error structures in PGLS Luke Matthews
  • Re: [R-sig-phylo] reply to alternative error structures in PGLS jiyanzhu
• [R-sig-phylo] Alternative error structures in PGLS jiyanzhu
• [R-sig-phylo] Announcement SSB Standalone meeting Alejandro Gonzalez Voyer
• [R-sig-phylo] [2nd announcement] "Bioinformatics: The Next 20 Years" (Oct 27) Emmanuel Paradis
• [R-sig-phylo] Fwd: Postdoc Position: Phylogenetic Climate Modeling & 3D Morphometrics David Bapst
• [R-sig-phylo] Interpreting stochastic character mapping results Lucas Eckert
• [R-sig-phylo] ONLINE COURSE – Introduction to Machine Learning and Deep Learning using R (IMDL03) Oliver Hooker
• [R-sig-phylo] Generalising the concept of cherries Graeme Lloyd
• [R-sig-phylo] MK1 vs MK2 with phylogenetic uncertainty Karla Shikev
• Re: [R-sig-phylo] Interpretation of Y~X vs. X~Y and estimation of Pagel's Lambda using PGLSR Ricardo Araújo
• [R-sig-phylo] wrong behaviour of is.monophyletic() with duplicated labels Emmanuel Paradis
• [R-sig-phylo] PGLS incorporating weights and estimate of effect size Alejandro Gonzalez Voyer
• [R-sig-phylo] ape::muscle doesn't work with Muscle5 Vojtěch Zeisek
• [R-sig-phylo] issue with reading matrix in R package DispRity Oliver Betz
  • Re: [R-sig-phylo] issue with reading matrix in R package DispRity Marguerite Butler
  • Re: [R-sig-phylo] issue with reading matrix in R package DispRity Liam J. Revell
  • Re: [R-sig-phylo] issue with reading matrix in R package DispRity Oliver Betz
• [R-sig-phylo] Substitution model rate matrix - how to read it? Martin Fikáček
  • Re: [R-sig-phylo] Substitution model rate matrix - how to read it? Emmanuel Paradis
• [R-sig-phylo] How to Report Results Across Multiple Trees? Trevor Bak
• [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Miguel Verdú del Campo
  • Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Liam J. Revell
  • Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Miguel Verdú del Campo
• [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Trimming protein alignment Emmanuel Paradis
  • Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Trimming protein alignment Emmanuel Paradis
  • Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
  • Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
• [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH01) Oliver Hooker
  • [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH01) Oliver Hooker
• Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection Julien Clavel
  • Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection Julien Clavel
• [R-sig-phylo] Question regarding PGLS in caper Oliver Betz
  • Re: [R-sig-phylo] Question regarding PGLS in caper Julien Clavel
  • Re: [R-sig-phylo] Question regarding PGLS in caper Alejandro Gonzalez Voyer
• [R-sig-phylo] PhD Studentship (STUDENTS WORLDWIDE): Parental care evolution Isabella Capellini
• [R-sig-phylo] Data normalization Ferenc Tibor Kagan
  • Re: [R-sig-phylo] Data normalization Jacob Berv
• [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Diego Almeida-Silva
  • Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Jacob Berv
  • Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Emmanuel Paradis
• [R-sig-phylo] FREE 1 DAY INTRO TO R AND R STUDIO (FIRR01) Oliver Hooker
• [R-sig-phylo] dist.nodes Nick Youngblut
  • Re: [R-sig-phylo] dist.nodes Emmanuel Paradis
  • Re: [R-sig-phylo] dist.nodes Klaus Schliep
• [R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix Felipe Rossetto
  • Re: [R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix Liam J. Revell
• [R-sig-phylo] hurdle models Ted Stankowich
  • Re: [R-sig-phylo] hurdle models jonnations
  • Re: [R-sig-phylo] hurdle models Krzysztof Bartoszek
• [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R Oliver Hooker
  • Re: [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R Salvador Espada Hinojosa
• [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Nathan Upham
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Nathan Upham
  • Re: [R-sig-phylo] Model Selection and PGLS David Bapst
  • Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
  • Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
  • Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
  • Re: [R-sig-phylo] Model Selection and PGLS Julien Clavel
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
  • Re: [R-sig-phylo] Model Selection and PGLS Chris Organ
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
  • Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
  • Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
  • Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
  • Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
  • Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
  • Re: [R-sig-phylo] Model Selection and PGLS Julien Clavel
• [R-sig-phylo] Extracting sequences from DNAbin according to a condition Jarrett Phillips
  • Re: [R-sig-phylo] Extracting sequences from DNAbin according to a condition Emmanuel Paradis
• [R-sig-phylo] phylogenetic correlation analysis Oliver Betz
  • Re: [R-sig-phylo] phylogenetic correlation analysis Julien Clavel
  • Re: [R-sig-phylo] phylogenetic correlation analysis Theodore Garland
  • Re: [R-sig-phylo] phylogenetic correlation analysis Cecile Ane
  • Re: [R-sig-phylo] phylogenetic correlation analysis Oliver Betz
  • Re: [R-sig-phylo] phylogenetic correlation analysis Joe Felsenstein
• [R-sig-phylo] Degrees of Freedom in PGLS Russell Engelman
  • Re: [R-sig-phylo] Degrees of Freedom in PGLS Theodore Garland
• [R-sig-phylo] Working with BTRTools or BTProcessR Gregory Mutumi
  • Re: [R-sig-phylo] Working with BTRTools or BTProcessR Liam J. Revell
  • Re: [R-sig-phylo] Working with BTRTools or BTProcessR Gregory Mutumi

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