Hi Roland, Just after the error, type:
traceback() This will show you, hopefully, where the error happened. Best, Emmanuel -----Original Message----- From: Roland Sookias <r.sook...@gmail.com> Sender: r-sig-phylo-boun...@r-project.org Date: Thu, 21 Jul 2011 12:44:30 To: r-sig-phylo@r-project.org<r-sig-phylo@r-project.org> Subject: [R-sig-phylo] Dating trees using date.phylo - ape problem? Hi all I'm trying to assign lengths to branches in a tree using the Ruta et al. 2008 method via Graeme Lloyd's date.phylo() function (see http://www.graemetlloyd.com/methdpf.html). I keep coming up against an error for some reason. Graeme himself does exactly the same thing seemingly on his Mac (I'm using Windows 7, R 2.13.1, Ape 2.7-2 - Graeme has Ape 2.7-1) and it works. I've tried various permutations of the tree, with and without a rooted symbol [&r], and there are no special characters etc., the names in tree and ages list are the same. I still keep getting: ttree<-date.phylo(archotreeresolved, ages, rlen=1, method="equal") Error in ages[tree$tip.label[find.descendants(nodes[i], tree)], 1] : incorrect number of dimensions Any help, or advice what to try/look into much appreciated. Graeme thinks it's something with ape not date.phylo... Very best Roland [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo _______________________________________________ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
