Dear Phylothusiasts,
I need to compare multiple substitution models side-by-side (species clustering stuff by distances only). Unfortunately, I am not aware of an implementation of HKY and GTR distance computations using R. Maybe there is some Github code or something else that I have been missing? I do not want to build a phylogenetic tree. I can not use PAUP (>500 big fasta files).
Any ideas are greatly appreciated.
Best wishes,

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