Dear Hilmar, Jeannine and r-sig-phylo members,

Here's the error I get when trying to load RMesquite package on R, from
RStudio with R version 3.4.2
(the same error occurs when I try to load it on Linux with R versions: 215,
301, 310, 322, 342)

I have tried two loading options:

> install.packages("RMesquite", repos="http://R-Forge.R-project.org";)
Installing package into ‘D:/My Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘RMesquite’ is not available (for R version 3.4.1)

> install.packages("RMesquite")
Installing package into ‘D:/My Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘RMesquite’ is not available (for R version 3.4.1)

Thanks for the help
Best,
Ayelet

On Fri, Dec 1, 2017 at 7:54 PM, Hilmar Lapp <hilmar.l...@duke.edu> wrote:

> Ayelet - If you provide the exact error that prevents you from loading
> RMesquite, I can try to see what the underlying cause might be. I can’t
> help you with using Mesquite itself , but others on the list may, which is
> why I’m copying the list.
>
> Jeannine - I don’t know right now which version(s) of R won’t work with
> RMesquite. But the rJava package that it’s dependent on has I believe
> undergone some changes recently, so I’m not surprised if recent versions of
> R don’t work. (Can you report the error you were getting?)
>
> I think if there’s some continued interest for this package what would be
> best is to migrate it to being hosted on Github. At the time that would
> have made integration with the R package management difficult, which is why
> we chose R-Forge, but I think now if anything it’s the opposite. And Github
> is what I (and probably most others here) use all the time, so would be
> vastly preferable for maintenance for that reason alone. I’ll look into
> that later this month (unless someone wants to beat me to it).
>
> -hilmar
>
> Sent from away
>
> On Sep 23, 2017, at 3:31 AM, Ayelet Salman <ayelet.sal...@gmail.com>
> wrote:
>
> Dear Hilmar,
>
> I wasn't able to load RMesquite,
> I will very much appreciate your help with the Mesquite software
> Could you please guide me how to us Mesquite tools on batch data?
>
> e.g. applying the pairwise comparison tool on trees and character data,
> for several different genera.
> Currently I am loading the tree and data for every genera separately, and
> appling the pairwise comparison test for every genera. How can I save time
> and apply these same steps on the different genera data?
>
> Thanks,
> Ayelet
>
>
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.avast.com_sig-2Demail-3Futm-5Fmedium-3Demail-26utm-5Fsource-3Dlink-26utm-5Fcampaign-3Dsig-2Demail-26utm-5Fcontent-3Dwebmail&d=DwMFaQ&c=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc&r=eGWUXrFTNKFQ_7iv2ZZTsTpqF6jBUoOs67dzNTy0W_Y&m=XtWaA86jwYiS-E38jiKUh2-Wy8M5rAzczsBO5xyAJ8I&s=scG5V3F1V1aUsSumjdxEGkXJSzdFYTKIJK_9JZ4hzWU&e=>
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>
> On Wed, Sep 13, 2017 at 5:28 PM, Hilmar Lapp <hilmar.l...@duke.edu> wrote:
>
>> Hi Ayelet,
>>
>> Instructions for installing RMesquite are on the project’s homepage:
>> http://rmesquite.r-forge.r-project.org
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__rmesquite.r-2Dforge.r-2Dproject.org&d=DwMFaQ&c=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc&r=eGWUXrFTNKFQ_7iv2ZZTsTpqF6jBUoOs67dzNTy0W_Y&m=XtWaA86jwYiS-E38jiKUh2-Wy8M5rAzczsBO5xyAJ8I&s=D2Hm5Yrj5iT0hEg8gG21JtHki93r-kOPIVgtUq7LA9g&e=>
>>
>> Let us know if the information there doesn’t answer your question.
>>
>>   -hilmar
>>
>> > On Sep 11, 2017, at 6:10 AM, Ayelet Salman <ayelet.sal...@gmail.com>
>> wrote:
>> >
>> > Dear r-SIG-phylo members,
>> >
>> > I have tried to call the RMesquite package from R but got an error that
>> it
>> > is not available.
>> > Do you know how to download and install RMesquite (on windows or
>> server)?
>> >
>> > Any other idea how to use Mesquite or  the pairwise comparison tool
>> > (Maddison 2000) on a large scale data?
>> >
>> > Best,
>> > Ayelet
>> >
>> >       [[alternative HTML version deleted]]
>> >
>> > _______________________________________________
>> > R-sig-phylo mailing list - R-sig-phylo@r-project.org
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>> --
>> Hilmar Lapp -:- genome.duke.edu -:- lappland.io
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lappland.io&d=DwMFaQ&c=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc&r=eGWUXrFTNKFQ_7iv2ZZTsTpqF6jBUoOs67dzNTy0W_Y&m=XtWaA86jwYiS-E38jiKUh2-Wy8M5rAzczsBO5xyAJ8I&s=Hwjyv97NuUHJ6GMSST-7Y8_couWaYOezJVh_eQrA8X0&e=>
>>
>>
>

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