Dear list,
I am puzzled with this error when importing a bird tree subset from
https://birdtree.org/subsets/ .
The subset is supposed to be in nexus format. However,
trees<-read.nexus("output.nex")
Error in if (tp[3] != "") obj$node.label <- tp[3] :
missing value where TRUE/FALSE needed
read.tree gives the same error
read.newick gets stuck, it never ends reading in the tree
I tried scanning the file and then several notes appear before the actual
trees Thus, I tried read.annotated.nexus from OutbreakTools.
But it gives another error:
Error in read.annotated.nexus("C:/Users/agusc/Dropbox/output.nex") :
.annotated.clado.build is not yet implemented.
I tried with several different subsets from different backbones and none
worked.
Here is one: https://www.dropbox.com/s/037u6pjr4006o6r/output.nex?dl=0
Somebody has reported this error previously in the internet, but it still
seems to be unsolved.
Thanks in advance and best regards.
Agus
--
Agustín Camacho Guerrero.
http://www.agustincamacho.com
Doutor em Zoologia.
Laboratório de Herpetologia, Departamento de Zoologia, Instituto de
Biociências, USP.
Rua do Matão, trav. 14, nº 321, Cidade Universitária,
São Paulo - SP, CEP: 05508-090, Brasil.
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
