Dear list, I am puzzled with this error when importing a bird tree subset from https://birdtree.org/subsets/ .
The subset is supposed to be in nexus format. However, trees<-read.nexus("output.nex") Error in if (tp != "") obj$node.label <- tp : missing value where TRUE/FALSE needed read.tree gives the same error read.newick gets stuck, it never ends reading in the tree I tried scanning the file and then several notes appear before the actual trees Thus, I tried read.annotated.nexus from OutbreakTools. But it gives another error: Error in read.annotated.nexus("C:/Users/agusc/Dropbox/output.nex") : .annotated.clado.build is not yet implemented. I tried with several different subsets from different backbones and none worked. Here is one: https://www.dropbox.com/s/037u6pjr4006o6r/output.nex?dl=0 Somebody has reported this error previously in the internet, but it still seems to be unsolved. Thanks in advance and best regards. Agus -- Agustín Camacho Guerrero. http://www.agustincamacho.com Doutor em Zoologia. Laboratório de Herpetologia, Departamento de Zoologia, Instituto de Biociências, USP. Rua do Matão, trav. 14, nº 321, Cidade Universitária, São Paulo - SP, CEP: 05508-090, Brasil. [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - Rfirstname.lastname@example.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://email@example.com/