The result of sudo apt-get install r-base-core is: Reading package lists... Done Building dependency tree Reading state information... Done r-base-core is already the newest version. r-base-core set to manually installed. The following packages were automatically installed and are no longer required: linux-headers-2.6.32-21-generic linux-headers-2.6.32-21 dkms Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
So, it looks like I should already have the shared libraries installed. I originally installed the R packages from the Ubuntu Software Center, and then I installed Rcpp and RInside using install.packages() in R. Does this give any new information, or should I try uninstalling everything and starting from scratch? Thanks, David On Mon, Jul 12, 2010 at 4:52 PM, Dirk Eddelbuettel <[email protected]> wrote: > > David, > > Thanks for bringing the discussion here with is more topical for Rcpp and > RInside. > > On 12 July 2010 at 16:34, David Rosengarten wrote: > | Hi, > | > | I originally emailed the r-sig-debian list and was directed here. I am > | trying to run the examples in /RInside/examples/standard such as > | rinside_sample_0, but I am getting the error: > | > | error while loading shared libraries: libR.so: cannot open shared object > file: > | No such file or directory > | > | Does anyone know how to deal with this? I was told to include the output > of > | 'make' and 'ldd ./rinside_sample0', so they are as follows: > | > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample0.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample0 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample1.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample1 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample2.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample2 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample3.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample3 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample4.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample4 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample5.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample5 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample6.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample6 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample7.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample7 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s > rinside_sample8.cpp > | -L/usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/ > | lib -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R > | /site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_sample8 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s rinside_test0.cpp > -L > | /usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/lib > | -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R/ > | site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_test0 > | g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include > -I/usr/ > | local/lib/R/site-library/RInside/lib -g -O2 -Wall -s rinside_test1.cpp > -L > | /usr/lib64/R/lib -lR -lblas -llapack > -L/usr/local/lib/R/site-library/Rcpp/lib > | -lRcpp -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib > -L/usr/local/lib/R/ > | site-library/RInside/lib -lRInside > -Wl,-rpath,/usr/local/lib/R/site-library/ > | RInside/lib -o rinside_test1 > | > | linux-vdso.so.1 => (0x00007fff30bff000) > | libR.so => not found > | libblas.so.3gf => /usr/lib/atlas/libblas.so.3gf (0x00007f50d2512000) > | liblapack.so.3gf => /usr/lib/atlas/liblapack.so.3gf (0x00007f50d190a000) > | libRcpp.so => /usr/local/lib/R/site-library/Rcpp/lib/libRcpp.so > | (0x00007f50d16b2000) > | libRInside.so => /usr/local/lib/R/site-library/RInside/lib/libRInside.so > | (0x00007f50d149d000) > | libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007f50d1188000) > | libm.so.6 => /lib/libm.so.6 (0x00007f50d0f05000) > | libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007f50d0cee000) > | libc.so.6 => /lib/libc.so.6 (0x00007f50d096a000) > | libgfortran.so.3 => /usr/lib/libgfortran.so.3 (0x00007f50d067d000) > | /lib64/ld-linux-x86-64.so.2 (0x00007f50d2ecd000) > | libR.so => not found > | libR.so => not found > > There is your problem. > > | I have R and r-base-dev installed, so I don't understand why this is > happening. > | Any help would be much appreciated. > > You may have R, but I suspect you do not have R built with shared > libraries. > The quickest fix, given that you started on r-sig-debian, may be > > $ sudo apt-get install r-base-core > > Else you can of course rebuild R from source etc, but you have to tell > configure to use --enable-R-shlib or else you cannot embed R. And > RInside wants to embed R, so you can't the latter witout the former. > > Hope this helps. > > -- > Regards, Dirk >
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