On 14 January 2011 at 11:45, amao oluwole wrote:
| Hi all,
| I hope this is the correct mailing list for this question. I have
Yes! Thanks for posting here, and welcome!
| successfully installed R-2.12.1, and the latest version of the Rcpp and
RInside
| packages on a linux operating system by using the commands:
|
| install.packages("Rcpp", repos="http://R-Forge.R-project.org";)
| install.packages("RInside", repos="http://R-Forge.R-project.org";)
|
| I then added the bin and lib paths to my environmental variable.
|
| To test the install, I compiled the examples in RInside/inst/examples/standard
| successfully. When I tried to run the simple hello world application,
| rinside_sample0.cpp program, I got the following error:
|
| examples/standard> ./rinside_sample0
| terminate called after throwing an instance of 'Rcpp::index_out_of_bounds'
| what(): index out of bounds
| Abort
|
| examples/standard>
|
| Am I running the example executable correctly? I do not understand why the
| error occurs.
You did not supply sufficient detail.
Despite what a certain malcontent keeps repeating and misrepresenting here,
there is a release process for Rcpp. Which, inter alia, involves running all
known examples, tests, ... in Rcpp and some other packages, including RInside.
So see below for a quick 'make clean; make; ./rinside_sample0' on my machine.
I may right now be current with Rcpp from SVN rather than the released 0.9.0
but the same tests where ran with the preceding releases, incl 0.9.0, and I
could easily flip back to Rcpp if you needed to validate something.
So in short: make sure you have current and correct packages, R correctly
configured (ie the last person requesting help had not built R as a shared
library, that cannot work) and run the examples documented (ie 'make' should
do). If there are errors or warning with make, look at those.
Please do feel free to come back with further questions.
Hope this helps, Dirk
Below is a cut and pasted session copy from an emacs shell buffer where the
command gets echo'ed. This uses some compile/link flags I have in
~/.R/Makevars but that is not material either.
edd@max:~/svn/rinside/pkg/inst/examples/standard$ make clean
make clean
rm -vf rinside_callbacks0 rinside_module_sample0 rinside_sample0
rinside_sample1 rinside_sample2 rinside_sample3 rinside_sample4 rinside_sample5
rinside_sample6 rinside_sample7 rinside_sample8 rinside_sample9 rinside_test0
rinside_test1
removed `rinside_callbacks0'
removed `rinside_module_sample0'
removed `rinside_sample0'
removed `rinside_sample1'
removed `rinside_sample2'
removed `rinside_sample3'
removed `rinside_sample4'
removed `rinside_sample5'
removed `rinside_sample6'
removed `rinside_sample7'
removed `rinside_sample8'
removed `rinside_sample9'
removed `rinside_test0'
removed `rinside_test1'
rm -vrf *.dSYM
edd@max:~/svn/rinside/pkg/inst/examples/standard$ make
make
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_callbacks0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_callbacks0
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_module_sample0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_module_sample0
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample0
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample1.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample1
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample2.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample2
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample3.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample3
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample4.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample4
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample5.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample5
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample6.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample6
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample7.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample7
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample8.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample8
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_sample9.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample9
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_test0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_test0
g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
-I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
rinside_test1.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
-L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
-Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
-L/usr/local/lib/R/site-library/RInside/lib -lRInside
-Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_test1
edd@max:~/svn/rinside/pkg/inst/examples/standard$ ./rinside_sample0
./rinside_sample0
Hello, world!
edd@max:~/svn/rinside/pkg/inst/examples/standard$ ./rinside_sample1
./rinside_sample1
Running ls()
[1] "argv" "M"
Showing M
[,1] [,2] [,3] [,4]
[1,] 0 1 2 3
[2,] 10 11 12 13
[3,] 20 21 22 23
[4,] 30 31 32 33
Showing colSums()
[1] 60 64 68 72
In C++ element 0 is 60
In C++ element 1 is 64
In C++ element 2 is 68
In C++ element 3 is 72
edd@max:~/svn/rinside/pkg/inst/examples/standard$
| Thanks!
|
| ----------------------------------------------------------------------
| _______________________________________________
| Rcpp-devel mailing list
| Rcpp-devel@lists.r-forge.r-project.org
| https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
_______________________________________________
Rcpp-devel mailing list
Rcpp-devel@lists.r-forge.r-project.org
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
