(Conrad, This started as this thread
http://thread.gmane.org/gmane.comp.lang.r.rcpp/1877
which picks up the issue first reported by Jan regaring arma_version not
being found by the linker and which you commented on so colourfully a few
days ago.)
On 28 April 2011 at 13:38, Jan de Leeuw wrote:
| And I have armadillo-1.2.0 compiled from source on the Mac in /usr/local
|
| But removing the include and lib files does not help
So just as a reference point, I did have Ubuntu's libarmadillo(0,-dev-doc)
installed but both before and after purgeing them, I can do 'R CMD check
RcppArmadillo' just fine against the SVN sources. Dito for R CMD INSTALL.
So I don't what's going on -- there should not be an issue building this.
And on my end (and Romain's for that matter) it worked before and after the
suggested by Conrad to use arma::version::major etc directly.
So I really don't know
a) what is going on with Doug's setup as I use a very similar machine /
setup on my Ubuntu box --- but then Doug unfortunately had build issues
with related code on his box but not on mine, and
b) what is going on Jan's Mac -- other than Conrad's earlier colourful
remarks about maybe something being fishy with the OS X compiler, but
that is just a guess too.
Also, a simple check (see below) builds fine here. The RcppArmadillo package
really does nothing much different than this check: access the elements of
that struct.
So I remain rather puzzled. One local build issue I could live with, but
that both Doug and Jan have issues is a little strange. But as I said:
nothing I can replicate at my end. This should just work.
Dirk
edd@max:~/svn/rcpp/pkg/RcppArmadillo/inst/include$ cat /tmp/quickCheck.cpp
#include <armadillo>
int main(void) {
std::cout << "Seeing " << arma::arma_version::major
<< "." << arma::arma_version::minor
<< "." << arma::arma_version::patch << std::endl;
}
edd@max:~/svn/rcpp/pkg/RcppArmadillo/inst/include$ g++ -I. -o /tmp/quickCheck
/tmp/quickCheck.cpp
edd@max:~/svn/rcpp/pkg/RcppArmadillo/inst/include$ /tmp/quickCheck
Seeing 1.2.0
edd@max:~/svn/rcpp/pkg/RcppArmadillo/inst/include$
| On Apr 28, 2011, at 13:26 , Douglas Bates wrote:
|
| > I just realized what is probably happening. I have the Ubuntu
| > armadillo package installed and that version of the header files may
| > be being picked up ahead of the version in the package.
| >
| > On Thu, Apr 28, 2011 at 3:24 PM, Dirk Eddelbuettel <e...@debian.org> wrote:
| >>
| >> Hi Doug,
| >>
| >> We're in the middle of our Rcpp workshop so this is timely :)
| >>
| >> On 28 April 2011 at 14:53, Douglas Bates wrote:
| >> | I have been facing this problem for months now and I still don't know
| >> | why other users of Ubuntu 10.10 using
| >> |
| >> | $ g++ --version
| >> | g++ (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5
| >> | Copyright (C) 2010 Free Software Foundation, Inc.
| >> | This is free software; see the source for copying conditions. There is
NO
| >> | warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
| >> |
| >> | can install RcppArmadillo and I can't. Most recently I tried to
| >> | install the source package from CRAN and got the same error as I have
| >> | been getting for months.
| >> |
| >> |
| >> | > install.packages("RcppArmadillo", repos="http://cran.fhcrc.org";)
| >> | Installing package(s) into
‘/home/bates/R/x86_64-unknown-linux-gnu-library/2.13’
| >> | (as ‘lib’ is unspecified)
| >> | trying URL
'http://cran.fhcrc.org/src/contrib/RcppArmadillo_0.2.19.tar.gz'
| >> | Content type 'application/x-gzip' length 259638 bytes (253 Kb)
| >> | opened URL
| >> | ==================================================
| >> | downloaded 253 Kb
| >> |
| >> | * installing *source* package ‘RcppArmadillo’ ...
| >> | ** libs
| >> | ccache g++ -I/usr/share/R/include
| >> | -I"/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/Rcpp/include"
| >> | -I../inst/include -fpic -g -Wall -pipe -pedantic -c RcppArmadillo.cpp
| >> | -o RcppArmadillo.o
| >> | ccache g++ -I/usr/share/R/include
| >> | -I"/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/Rcpp/include"
| >> | -I../inst/include -fpic -g -Wall -pipe -pedantic -c fastLm.cpp -o
| >> | fastLm.o
| >> | g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o
| >> | -L/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/Rcpp/lib -lRcpp
| >> | -Wl,-rpath,/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/Rcpp/lib
| >> | -llapack -lblas -lgfortran -lm -L/usr/lib64/R/lib -lR
| >> | installing to
/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/RcppArmadillo/libs
| >> | ** R
| >> | ** inst
| >> | ** preparing package for lazy loading
| >> | ** help
| >> | *** installing help indices
| >> | ** building package indices ...
| >> | ** testing if installed package can be loaded
| >> | Error in dyn.load(file, DLLpath = DLLpath, ...) :
| >> | unable to load shared object
| >> |
'/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/RcppArmadillo/libs/RcppArmadillo.so':
| >> |
/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/RcppArmadillo/libs/RcppArmadillo.so:
| >> | undefined symbol: _ZN4arma12arma_version5majorE
| >>
| >> You know, Jan has the exact same issue and I blamed the Mac. Maybe the
| >> difference is having Armadillo or not. This all works on my box, so could
| >> you just install Ubuntu's armadillo package?
| >>
| >> It still works for me ... and that may be a part of the changes.
| >>
| >> Cheers from a seminar room at UIC, Dirk
| >>
| >> | Error: loading failed
| >> | Execution halted
| >> | ERROR: loading failed
| >> | * removing
‘/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/RcppArmadillo’
| >> | * restoring previous
| >> | ‘/home/bates/R/x86_64-unknown-linux-gnu-library/2.13/RcppArmadillo’
| >> |
| >> | The downloaded packages are in
| >> | ‘/tmp/RtmpoJ3I0u/downloaded_packages’
| >> | Warning message:
| >> | In install.packages("RcppArmadillo", repos = "http://cran.fhcrc.org";) :
| >> | installation of package 'RcppArmadillo' had non-zero exit status
| >> | > sessionInfo()
| >> | R version 2.13.0 (2011-04-13)
| >> | Platform: x86_64-pc-linux-gnu (64-bit)
| >> |
| >> | locale:
| >> | [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
| >> | [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
| >> | [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
| >> | [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
| >> | [9] LC_ADDRESS=C LC_TELEPHONE=C
| >> | [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
| >> |
| >> | attached base packages:
| >> | [1] stats graphics grDevices utils datasets methods base
| >> |
| >> | loaded via a namespace (and not attached):
| >> | [1] tools_2.13.0
| >> |
| >> |
| >> | The version of the source file RcppArmadillo/src/RcppArmadillo.cpp
| >> | that I have (SVN version 3012 for the file - the source code package
| >> | is at SVN version 3023) does indeed use arma::version::major,
| >> | arma::version:minor and arma::version::patch but they aren't defined
| >> | any place that I can see.
| >> |
| >> | What am I missing here?
| >> | _______________________________________________
| >> | Rcpp-devel mailing list
| >> | Rcpp-devel@lists.r-forge.r-project.org
| >> | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
| >>
| >> --
| >> Gauss once played himself in a zero-sum game and won $50.
| >> -- #11 at http://www.gaussfacts.com
| >>
| >
|
| ===
| Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of
Statistics;
| Director: UCLA Center for Environmental Statistics (CES);
| Editor: Journal of Multivariate Analysis, Journal of Statistical Software;
| US mail: 8125 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554
| phone (310)-825-9550; fax (310)-206-5658; email: dele...@stat.ucla.edu
| .mac: jdeleeuw ++++++ aim: deleeuwjan ++++++ skype: j_deleeuw
| homepages: http://gifi.stat.ucla.edu ++++++ http://www.cuddyvalley.org
|
-------------------------------------------------------------------------------------------------
| No matter where you go, there you are. --- Buckaroo Banzai
| http://gifi.stat.ucla.edu/sounds/nomatter.au
|
-------------------------------------------------------------------------------------------------
|
|
|
|
|
--
Gauss once played himself in a zero-sum game and won $50.
-- #11 at http://www.gaussfacts.com
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