Hi Steve, Thanks for your reply.
1. Yes, simple scripts run via inline without issue. ( Rcpp and RcppArmadillo (latest versions) build and install without issue). So I am confused by the syntax errors when including libRcpp.a when attempting to build my package. 2. > sessionInfo() R version 2.13.2 (2011-09-30) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] RcppArmadillo_0.2.29 Rcpp_0.9.7 On Tue, Oct 18, 2011 at 11:39 AM, Steve Lianoglou < mailinglist.honey...@gmail.com> wrote: > What is the output of sessionInfo()? In particular it will be helpful > to know what versions of Rcpp and RcppArmadillo you have installed on > the mac you are trying to compile on. > > Also, do "simple" things work? Can you run a trivial `inline` example, > for instance? > > -steve > > On Tue, Oct 18, 2011 at 12:43 PM, terrance savitsky <tds...@gmail.com> > wrote: > > Dear Rcpp experts, I'm finding difficulty to build a package (created on > > Win) that uses Rcpp and RcppArmadillo on the Mac. I've attempted the > build > > on multiple machines to rule out local issues. I find a June 27 post on > > the Rcpp list > > ( > http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2011-June/002548.html > ) > > that experiences very similar "dlopen" issues as I show below, though the > > cause is attributed to proper construction of C++ templates. In my case, > I > > do not create any templated classes; only use those in Rcpp and > > RcppArmadillo. In this regard, please note the upstream syntax errors > when > > attempting to include libRcpp.a. > > This post is a continuation of my previous, though I decided to change > the > > title and re-post as I thought it would be more useful for future > searches > > if composed this way. > > > > Here are the error messages: > > > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/lib/x86_64/libRcpp.a: > > line 1: syntax error near unexpected token `newline' > > > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/lib/x86_64/libRcpp.a: > > line 1: `!<arch>' > > > > g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names > -undefined > > dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib > -o > > growcurves.so DPre.o lgm.o mmC.o mmCchol.o mmCmiar.o mmCmvplusDP.o > > mmCplusDP.o mmI.o mmIgroup.o mmIgroupDP.o mmIplusDP.o mmmult.o > > -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack > > -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas -lgfortran > > -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework > > -Wl,CoreFoundation > > > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/lib/x86_64/libRcpp.a: > > line 1: syntax error near unexpected token `newline' > > > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/lib/x86_64/libRcpp.a: > > line 1: `!<arch>' > > > > installing to > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves/libs/x86_64 > > > > ** R > > > > ** data > > > > ** inst > > > > ** preparing package for lazy loading > > > > ** help > > > > *** installing help indices > > > > ** building package indices ... > > > > ** testing if installed package can be loaded > > > > Error in dyn.load(file, DLLpath = DLLpath, ...) : > > > > unable to load shared object > > > '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves/libs/x86_64/growcurves.so': > > > > > > > dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves/libs/x86_64/growcurves.so, > > 6): Symbol not found: __ZTIN4Rcpp12not_a_matrixE > > > > Referenced from: > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves/libs/x86_64/growcurves.so > > > > Expected in: flat namespace > > > > in > > > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves/libs/x86_64/growcurves.so > > > > Error: loading failed > > > > Execution halted > > > > ERROR: loading failed > > > > * removing > > > '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/growcurves' > > > > -- > > Thank you for your help and expertise, Terrance Savitsky > > > > _______________________________________________ > > Rcpp-devel mailing list > > Rcpp-devel@lists.r-forge.r-project.org > > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > > > > > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact > -- Thank you, Terrance Savitsky
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