Thanks Davor. I have exactly the same computer as you have, and my compiler calls are identical as well. upgraded to Xcode 4.4 just to make sure. I get the same error:
R(420) malloc: *** error for object 0x7fff7247f860: pointer being freed was not allocated *** set a breakpoint in malloc_error_break to debug sh: line 1: 420 Abort trap: 6 '/Library/Frameworks/R.framework/Resources/bin/R' --no-save --slave < /var/folders/bd/xhwzz96x2xl6b02bwt4myhy00000gn/T//RtmpuUhAG7/file17642ce6044 I think this means process id 420, R, is making a memory mistake. I googled around and people get this error when developing iPhone apps. They then actually find a bug in their code, fix it and that's it. I guess I can exclude the bug in this case. Very weird. Thanks anyway. Florian On 15 August 2012 17:49, Davor Cubranic <[email protected]> wrote: > Works fine for me: > >> bash-3.2$ R CMD INSTALL mypack --no-multiarch >> * installing to library >> '/Library/Frameworks/R.framework/Versions/2.15/Resources/library' >> * installing *source* package 'mypack' ... >> ** libs >> *** arch - x86_64 >> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG >> -I/usr/local/include >> -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rcpp/include" >> -fPIC -g -O2 -c Num.cpp -o Num.o >> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG >> -I/usr/local/include >> -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rcpp/include" >> -fPIC -g -O2 -c rcpp_hello_world.cpp -o rcpp_hello_world.o >> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG >> -I/usr/local/include >> -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rcpp/include" >> -fPIC -g -O2 -c rcpp_module.cpp -o rcpp_module.o >> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include >> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG >> -I/usr/local/include >> -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rcpp/include" >> -fPIC -g -O2 -c stdVector.cpp -o stdVector.o >> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined >> dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o >> mypack.so Num.o rcpp_hello_world.o rcpp_module.o stdVector.o >> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rcpp/lib/x86_64/libRcpp.a >> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >> -Wl,CoreFoundation >> ld: warning: directory not found for option '-L/usr/local/lib' >> installing to >> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/mypack/libs/x86_64 >> ** R >> ** preparing package for lazy loading >> ** help >> Warning: /private/tmp/mypack/man/mypack-package.Rd:31: All text must be in a >> section >> Warning: /private/tmp/mypack/man/mypack-package.Rd:32: All text must be in a >> section >> *** installing help indices >> ** building package indices >> ** testing if installed package can be loaded >> >> * DONE (mypack) > > sessionInfo: >> > sessionInfo() >> R version 2.15.1 (2012-06-22) >> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >> >> locale: >> [1] C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> loaded via a namespace (and not attached): >> [1] tools_2.15.1 > > This is on 10.7.4 (Lion), using Xcode 4.4. > > Davor > > > On 2012-08-15, at 7:32 AM, Dirk Eddelbuettel wrote: > >> >> On 15 August 2012 at 14:56, Florian Oswald wrote: >> | I tried out your RcppBDT package and I could build it without any >> | problem, and it works in R. It's quite strange. I've used Rcpp many >> | times before without problem, most of the time with inline tough. I'm >> | using the apple default compiler llvm-g++-4.2. >> | >> | Thanks for any other suggestions. I'll try to reverse engineer RcppBDT >> | and see how far I get. >> >> Weird. I spent quite some time in March/April going over Rcpp modules and >> the loading code as John had made changes -- we were then forced to wait for >> R 2.15.1 to come out to use them. >> >> The Rcpp modules vignette is mostly right. There are sort of two ways to do >> it, and you have to follow things closely. But that is what the skeleton >> does so I am unsure what goes haywire here. >> >> Maybe someone else with an OS X box and R 2.15.1 can help? >> >> Dirk >> >> | Florian >> | >> | On 15 August 2012 14:14, Dirk Eddelbuettel <[email protected]> wrote: >> | > >> | > Florian, >> | > >> | > I cannot reproduce that on Linux -- just did a quick test from the >> | > command-line: >> | > >> | > edd@max:~$ cd /tmp/ >> | > edd@max:/tmp$ r -lRcpp -e'Rcpp.package.skeleton("mypack",module=TRUE)' >> | > >> | > Attaching package: ‘utils’ >> | > >> | > The following object(s) are masked from ‘package:Rcpp’: >> | > >> | > .DollarNames, prompt >> | > >> | > Creating directories ... >> | > Creating DESCRIPTION ... >> | > Creating NAMESPACE ... >> | > Creating Read-and-delete-me ... >> | > Saving functions and data ... >> | > Making help files ... >> | > Done. >> | > Further steps are described in './mypack/Read-and-delete-me'. >> | > >> | > Adding Rcpp settings >> | > >> added RcppModules: yada >> | > >> added Depends: Rcpp >> | > >> added LinkingTo: Rcpp >> | > >> added useDynLib directive to NAMESPACE >> | > >> added Makevars file with Rcpp settings >> | > >> added Makevars.win file with Rcpp settings >> | > >> added example header file using Rcpp classes >> | > >> added example src file using Rcpp classes >> | > >> added example R file calling the C++ example >> | > >> added Rd file for rcpp_hello_world >> | > >> copied the example module file >> | > edd@max:/tmp$ R CMD INSTALL mypack >> | > * installing to library ‘/usr/local/lib/R/site-library’ >> | > * installing *source* package ‘mypack’ ... >> | > ** libs >> | > ccache g++-4.6 -I/usr/share/R/include -DNDEBUG >> -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g0 -O3 -Wall -pipe >> -Wno-variadic-macros -pedantic -c Num.cpp -o Num.o >> | > ccache g++-4.6 -I/usr/share/R/include -DNDEBUG >> -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g0 -O3 -Wall -pipe >> -Wno-variadic-macros -pedantic -c rcpp_hello_world.cpp -o rcpp_hello_world.o >> | > ccache g++-4.6 -I/usr/share/R/include -DNDEBUG >> -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g0 -O3 -Wall -pipe >> -Wno-variadic-macros -pedantic -c rcpp_module.cpp -o rcpp_module.o >> | > ccache g++-4.6 -I/usr/share/R/include -DNDEBUG >> -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g0 -O3 -Wall -pipe >> -Wno-variadic-macros -pedantic -c stdVector.cpp -o stdVector.o >> | > g++-4.6 -shared -o mypack.so Num.o rcpp_hello_world.o rcpp_module.o >> stdVector.o -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp >> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib -L/usr/lib/R/lib -lR >> | > installing to /usr/local/lib/R/site-library/mypack/libs >> | > ** R >> | > ** preparing package for lazy loading >> | > ** help >> | > Warning: /tmp/mypack/man/mypack-package.Rd:31: All text must be in a >> section >> | > Warning: /tmp/mypack/man/mypack-package.Rd:32: All text must be in a >> section >> | > *** installing help indices >> | > ** building package indices >> | > ** testing if installed package can be loaded >> | > >> | > * DONE (mypack) >> | > edd@max:/tmp$ r -lmypack -e'cat("Hello, world\n")' >> | > Hello, world >> | > edd@max:/tmp$ >> | > >> | > and dito in an R session I had open: >> | > >> | > R> library(mypack) >> | > R> mypack::foo() >> | > [1] 1 >> | > R> >> | > >> | > Also note that these package.skeleton tests are part of the normal unit >> | > tests. >> | > >> | > With Romain taking it a little easier these days, there is no committed >> | > developer access to OS X so I am afraid you (or someone else) will have >> to >> | > debug this. >> | > >> | > One last thing: you could try my package RcppBDT and RcppCNPy which both >> use >> | > Modules. They are pretty small, see if you can get them built and >> loaded. >> | > >> | > Dirk >> | > >> | > -- >> | > Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com >> >> -- >> Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com >> _______________________________________________ >> Rcpp-devel mailing list >> [email protected] >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel > _______________________________________________ Rcpp-devel mailing list [email protected] https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
