Follow-up: I found a connection to this error when running through the libraries: the function for which the symbol is not found is defined in line 85 of the stl_list.h. It is included into the libstdc++.a/libstdc++.dylib which is linked to the nloptr/nlopt build. As the build inside R throws an error, but not so the standalone build I assume, that R uses another libstdc++ library....
Best Simon On Sep 5, 2013, at 2:17 PM, Simon Zehnder <[email protected]> wrote: > Hi Dirk, > > An important update to my message: > > I called install.packages("nloptr") and I get exactly the same error. So I > think that something with my R and/or gcc installation is not correct. When I > install nloptr on the linux server of our cluster all runs fine. The point, > that I can build the nlopt library with my gcc compiler makes me hope to find > the error in the R installation (R-patched 3.0.1, although I built the gcc > with --disable-static). > > I have to find the error in my installation. The way you proposed should > work. Thanks again for your help! > > > Best > > Simon > > On Sep 5, 2013, at 1:37 PM, Dirk Eddelbuettel <[email protected]> wrote: > >> >> Simon, >> >> On 5 September 2013 at 12:44, Simon Zehnder wrote: >> | Hi Dirk, >> | >> | I was able to reconstruct my System this night and I immediately tried >> your suggestions: >> | >> | ii) Either using an absolute path nor repositioning the linking did work >> in my case. >> >> Well then you need to try something else. I would construct a two-file >> library (as a static build) and a two-file R package to load it, in order to >> work it out. It is doable; but I tend to have my code organized in a >> different way. >> >> No other immediate suggestion, sorry, >> >> Dirk >> >> -- >> Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com > > _______________________________________________ > Rcpp-devel mailing list > [email protected] > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel _______________________________________________ Rcpp-devel mailing list [email protected] https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
