Hi, I installed R-3.1.2 today, and am having trouble installing Rcpp.
The error message is Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/share/data/apps/R/R-3.1.2/lib64/R/library/Rcpp/libs/Rcpp.so': /share/data/apps/R/R-3.1.2/lib64/R/library/Rcpp/libs/Rcpp.so: undefined symbol: _ZTISo so there's some library I haven't linked against. I've combed the vignettes and the web, but haven't found anything specific for this symbol, and haven't found a list of libraries that need to be specified when compiling Rcpp. Can anyone tell me what libraries I should be linking against? Best Steven McKinney Details: This is a custom install for a cluster situation, so libraries are in non-standard locations so as to be accessible to all machines in the cluster and local network. The error message in R is: libs /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c Date.cpp -o Date.o /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c Module.cpp -o Module.o /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c Rcpp_init.cpp -o Rcpp_init.o /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c api.cpp -o api.o /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c attributes.cpp -o attributes.o /share/data/usr/bin/gcc44 -I/share/data/apps/R/R-3.1.2/lib64/R/include -DNDEBUG -I../inst/include/ -I/share/data/usr/local/include -I/share/data/usr/include -fpic -g -O2 -c barrier.cpp -o barrier.o /share/data/usr/bin/gcc44 -shared -L/share/data/usr/local/lib64 -L/share/data/usr/lib64 -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o installing to /share/data/apps/R/R-3.1.2/lib64/R/library/Rcpp/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/share/data/apps/R/R-3.1.2/lib64/R/library/Rcpp/libs/Rcpp.so': /share/data/apps/R/R-3.1.2/lib64/R/library/Rcpp/libs/Rcpp.so: undefined symbol: _ZTISo Error: loading failed Execution halted ERROR: loading failed > sessionInfo() R version 3.1.2 (2014-10-31) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_3.1.2 tools_3.1.2 > Steven McKinney, Ph.D. Statistician Molecular Oncology and Breast Cancer Program British Columbia Cancer Research Centre email: smckinney +at+ bccrc +dot+ ca tel: 604-675-8000 x7561 BCCRC Molecular Oncology 675 West 10th Ave, Floor 4 Vancouver B.C. V5Z 1L3 Canada _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
