Hi Jonathon, On 8 September 2015 at 20:08, Jonathon Love wrote: | hi dirk, | | with further testing, it occurs with any version from CRAN (available | for trusty at least). | | i.e. | | r-base-core | 3.2.2-1trusty0 | | r-base-core | 3.2.1-4trusty0 | | r-base-core | 3.2.1-3trusty0 | | r-base-core | 3.2.1-2trusty0 | | r-base-core | 3.2.1-1trusty0 | | r-base-core | 3.2.0-4trusty0 | | r-base-core | 3.2.0-1trusty | | r-base-core | 3.1.3-1trusty | | r-base-core | 3.1.2-1trusty0 | | r-base-core | 3.1.1-1trusty0 | | r-base-core | 3.1.0-1trusty0 | | | works with this one (from archive.ubuntu.com): | | r-base-core | 3.0.2-1ubuntu1 | | | using rcpp 0.12.0 and rinside 0.2.13 from my PPA | | https://launchpad.net/~jonathon-love/+archive/ubuntu/jasp/+packages | | any clues?
Not really. A minimally reproducible example is always welcome. Also note how I suggested below to try Rcpp from GitHub which is near a release. Dirk | with thanks | | jonathon | | | On 8/09/2015 4:29 pm, Dirk Eddelbuettel wrote: | > | > On 8 September 2015 at 09:28, Jonathon Love wrote: | > | hi dirk, | > | | > | my application JASP makes use of RInside, and has for about two years | > | now (https://jasp-stats.org). however, i've just found the most bizare | > | bug. it only seems to occur under R 3.2.2 (from CRAN) under Ubuntu | > | Trusty. the issue does not occur under R 3.0.2 (from the standard ubuntu | > | repos), nor does it occur under R 3.2.2 on Ubuntu Vivid. | > | | > | the problem is, bizarely enough, to do with a call to stats::quantile( ) | > | | > | calling: | > | | > | stats::quantile(x, probs=0.01) | > | | > | within JASP, gives the error: | > | | > | "unused argument (probs = 0.01)" | > | | > | but calling it outside of JASP, in an R session run at the terminal, | > | gives me the expected result. | > | | > | i have inspected the Version, the .libPaths(), everything between the | > | terminal and JASP is identical. | > | calling: | > | | > | print(stats::quantiles) | > | | > | gives me the same (short) function definition in both environments | > | | > | if i run stats::quantile(1:10), inside of JASP, it gives me the exact | > | vector back (rather than the quantiles)! | > | | > | if i go to the R SVN, and copy the stats::quantile.default() into the | > | JASP R code, rename it, and substitute calls within JASP, everything | > | works fine. | > | | > | there's also an issue with stats::as.formula() not working | > | | > | in typically JASP usage, dozens of R functions are called, and there | > | don't seem to be any issues other than these, so it appears to be | > | isolated to the stats package. | > | | > | the only difference i can see, is that one runs inside of RInside, the | > | other at the terminal. | > | | > | any idea of what it could cause this? | > | > We are aware of one issue between R 3.2.2 and Rcpp 0.12.0 which is due to | > recent changes in R prior to the R 3.2.2 release. That is addressed in | > Rcpp's master branch on GitHub so you could try that. It should also work | > with R-devel. We are planning Rcpp 0.12.1 "relatively soon" because of this. | > | > Hope that helps, if it doesn;t we need to dig deeper. | > | > Dirk | > | | | -- | | JASP - A Fresh Way to Do Statistics | http://jasp-stats.org/ | | -- | | How happy is he born and taught, | That serveth not another's will; | Whose armour is his honest thought, | And simple truth his utmost skill | | This man is freed from servile bands | Of hope to rise, or fear to fall: | Lord of himself, though not of lands, | And, having nothing, yet hath all. | | -- Sir Henry Wotton | | _______________________________________________ | Rcpp-devel mailing list | Rcpp-devel@lists.r-forge.r-project.org | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
