Thanks Kevin,

I submitted bssm again to CRAN and claimed that the issue is with clang 4.0.0, 
but CRAN just updated to clang 4.0.1 and the issue remains (and there is also a 
new issue...).

But, while implementing new stuff which also use Xptr, I realized that I can 
somewhat streamline my previous codes, which I hope might result warning free 
code by accident. ;)

Best,

Jouni
________________________________
Lähettäjä: Kevin Ushey [kevinus...@gmail.com]
Lähetetty: 9. heinäkuuta 2017 2:33
Vastaanottaja: Helske, Jouni
Kopio: rcpp-de...@r-forge.wu-wien.ac.at
Aihe: Re: [Rcpp-devel] Call to function through pointer to incorrect function 
type on UBSAN

I can't replicate the reported UBSAN issues on my macOS machine (R-devel 
compiled with LLVM clang 4.0.1, with address + undefined behavior sanitizers 
active).

The warnings look somewhat dubious to me: for example, the first warning:

function_pointers.h:99:12: runtime error: call to function 
a1_fn(arma::Col<double> const&, arma::Col<double> const&) through pointer to 
incorrect function type 'arma::Col<double> (*)(const arma::Col<double> &, const 
arma::Col<double> &)'
/tmp/RtmpObvRHm/sourceCpp-x86_64-pc-linux-gnu-0.12.11/sourcecpp_96075e756157/growth_model_functions.cpp:7:
 note: a1_fn(arma::Col<double> const&, arma::Col<double> const&) defined here


If I'm reading that correctly, you have the following types:

Pointer:                      (arma::Col<double> const&,  arma::Col<double> 
const& )
Actual:  arma::Col<double> (*)(const arma::Col<double> &, const 
arma::Col<double> &)


and those look compatible to me (the only difference is the ordering of the 
'const &' printing in each case).

Unless I'm missing something obvious, it seems like this might just be a bug in 
the version of UBSAN used on the CRAN build machines? The fact that this error 
is not seen with gcc, only with clang, supports that hypothesis, so I think you 
can safely ignore those errors. (Perhaps this was a bug in Clang 4.0.0 that was 
fixed in Clang 4.0.1)

Kevin


On Fri, Jul 7, 2017 at 2:58 PM, Helske, Jouni 
<jouni.hel...@jyu.fi<mailto:jouni.hel...@jyu.fi>> wrote:
I got some warnings on CRAN with UBSAN relating to my use of user supplied C++ 
function using Xptr: 
https://www.stats.ox.ac.uk/pub/bdr/memtests/clang-UBSAN/bssm/build_vignettes.log

I can't see anything wrong in my codes, although I have just tried to mimic 
some Dirk's Xptr examples without fully understanding what is going on, so 
maybe I actually do something silly. But I then noticed that Rcpp also has 
similar kind of warnings 
(https://www.stats.ox.ac.uk/pub/bdr/memtests/clang-UBSAN/Rcpp/build_vignettes.log),
 so I wonder if these are anything to worry about? I tested my package on GCC 
based address sanitizer using docker, and did not get any warnings with that 
setup, which makes me think that maybe it's just some clang issue? Some 
googling seems to support this theory: 
https://stackoverflow.com/questions/43220926/call-to-function-unknown-through-pointer-to-incorrect-function-type

Best,

Jouni




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