Unless I'm mistaken, neither are required to install binary packages. Can you check your *source* build setup; try:
curl -O https://cran.r-project.org/src/contrib/RcppArmadillo_0.8.500.0.tar.gz R CMD INSTALL RcppArmadillo_0.8.500.0.tar.gz If that goes through without a hitch then it's probably a package issue. Are you using RStudio? Check your build directory for any .Rprofile or .Renviron files, and also check ~/.R/Makevars for errors. If you can list the required libraries for bamdb, I'm happy to try a build on my end. (I'm lazy to go through the CMake list :-)) Keith > On May 1, 2018, at 3:07 AM, Evan Biederstedt <evan.biederst...@gmail.com> > wrote: > > I would add, I think clang and gfortran are working correctly, as these are > required for `install.packages('RcppArmadillo')` to install properly. > > On Tue, May 1, 2018 at 3:06 AM, Evan Biederstedt <evan.biederst...@gmail.com> > wrote: > Maybe my Mac OS needs updating...possibly something with XCode, but it's not > clear how... > > --- mac OS Sierra 10.12.6 > --- CRAN R 3.4.3 > ---clang & gfortran > > $ clang --version > Apple LLVM version 9.0.0 (clang-900.0.39.2) > Target: x86_64-apple-darwin16.7.0 > Thread model: posix > InstalledDir: /Library/Developer/CommandLineTools/usr/bin > > $ gfortran --version > GNU Fortran (GCC) 7.1.0 > Copyright (C) 2017 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > > I will update once I have access to and try this on several other mac boxes > with different specs.. > > Thank you to everyone for the help. > > > On Tue, May 1, 2018 at 1:44 AM, Ralf Stubner <ralf.stub...@r-institute.com> > wrote: > > Am 30.04.2018 um 23:42 schrieb Evan Biederstedt <evan.biederst...@gmail.com>: > >> @Ralf >> >> > I had not installed the necessary C library, so unsurprisingly the >> > compilation step already failed. What I find interesting is that in my >> > case "-std=gnu++11“ and "-I../inst/include/" are present in the command >> > line options for clang++. These are also missing from what you quoted and >> > are also a consequence of src/Makevars. It almost looks as if this file >> > got lost on your macOS box … >> >> Interesting....I'm not sure what to make of this of course, but it would be >> interesting if it was only happening on this macbook. Perhaps OS version or >> brew could be to blame? I'm not sure what else would be "special" about this >> macbook.... > > On my side that would be > • macOS high Sierra > • CRAN R 3.4.4 > • clang and gfortran as recommended by CRAN > • brew is installed but I do not see how it enters the picture > > Greetings > Ralf > > > _______________________________________________ > Rcpp-devel mailing list > Rcpp-devel@lists.r-forge.r-project.org > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel _______________________________________________ Rcpp-devel mailing list Rcpp-devel@lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
