--- re-building ‘lolog-ergm.Rmd’ using rmarkdown Quitting from lines 69-75 (lolog-ergm.Rmd) Error: processing vignette 'lolog-ergm.Rmd' failed with diagnostics: unimplemented type (28) in 'duplicate'
I don't believe there is a type (*SXP) 28 in R. This could be due to memory misuse. Have you tried running the R code in lolog-ergm.Rmd (and your unit tests) in R after setting gctorture(TRUE)? Bill Dunlap TIBCO Software wdunlap tibco.com On Tue, Jan 8, 2019 at 1:31 PM Fellows, Ian <ian.fell...@stat.ucla.edu> wrote: > > Hi All, > > I have a package ( https://github.com/statnet/lolog | > https://cran.r-project.org/web/packages/lolog/index.html ) that makes > extensive use of Rcpp modules and passes module objects up and down between > R and C++ regularly. I’ve used the package extensively in large simulation > studies, and analyses where it has been stable. > > However, I have become aware of an intermittent failure to re-build the > vignettes during R CMD check. I’ve only ever encountered the issue during > check. Every once in a while I get WARNINGS like the following: > > > ------- > > * checking re-building of vignette outputs ... WARNING > Error(s) in re-building vignettes: > ... > --- re-building ‘lolog-ergm.Rmd’ using rmarkdown > Quitting from lines 69-75 (lolog-ergm.Rmd) > Error: processing vignette 'lolog-ergm.Rmd' failed with diagnostics: > unimplemented type (28) in 'duplicate' > > --- failed re-building ‘lolog-ergm.Rmd’ > > --- re-building ‘lolog-introduction.Rmd’ using rmarkdown > --- finished re-building ‘lolog-introduction.Rmd’ > > SUMMARY: processing the following file failed: > ‘lolog-ergm.Rmd’ > > Error: Vignette re-building failed. > Execution halted > > ------- > > or > > ------- > > * checking re-building of vignette outputs ... [336s/452s] WARNING > Error(s) in re-building vignettes: > ... > --- re-building ‘lolog-ergm.Rmd’ using rmarkdown > --- finished re-building ‘lolog-ergm.Rmd’ > > --- re-building ‘lolog-introduction.Rmd’ using rmarkdown > Quitting from lines 355-381 (lolog-introduction.Rmd) > Error: processing vignette 'lolog-introduction.Rmd' failed with > diagnostics: > cannot coerce type 'environment' to vector of type 'any' > --- failed re-building ‘lolog-introduction.Rmd’ > > SUMMARY: processing the following file failed: > ‘lolog-introduction.Rmd’ > > Error: Vignette re-building failed. > Execution halted > > ------- > > > I’ve attempted to isolate the problem to something of a smaller but have > thus far been unsuccessful. Since this only happens occasionally, I thought > it might have something to do with how I’m passing objects up and down ( > see for example: > https://github.com/statnet/lolog/blob/master/inst/include/Model.h#L89 and > https://github.com/statnet/lolog/blob/master/inst/include/util.h#L29 ), > but that is just a shot in the dark. > > Does anyone have any insight as to how i might be able to better debug > this or intuitions about what could be the cause? Is it possible to get a > stack trace when rebuilding the vignettes? > > My apologies for the lack of a simple reproducible example. > > Sincerely, > Ian Fellows > > > > > > > _______________________________________________ > Rcpp-devel mailing list > Rcpp-devel@lists.r-forge.r-project.org > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
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