On 01/02/2019 17:22, Sariya, Sanjeev wrote:
Hi devs,
Platform – Unix
R version 3.4 and 3.5
Errors for –fPIC installation for two packages:
1)
I’m using r3.5 to install simplexreg on my local as:
/mnt/mfs/cluster/bin/R-3.5/bin/R CMD INSTALL -l ./ simplexreg_1.3.tar.gz
When I do it, I get error as follows:
* installing *source* package ‘simplexreg’ ...
** package ‘simplexreg’ successfully unpacked and MD5 sums checked
** libs
g++ -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG
-I/gsl/win64/include -I/usr/local/include -fpic -g -O2 -c
sim.gee.cpp -o sim.gee.o
g++ -shared -L/usr/local/lib -o simplexreg.so sim.gee.o -L/gsl/win64/lib
-lgsl -lgslcblas -lm
/usr/bin/ld: /usr/local/lib/libgslcblas.a(xerbla.o): relocation
R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when
making a shared object; recompile with -fPIC
...
May I know how to bypass this error?
Try to do what error message says: "recompile with -fPIC" (you have
-fpic instead). It is safer to get the exact syntax from
$ R CMD config CXXPICFLAGS
-fPIC
Serguei.
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